PEACHi
GeneSet HIV_A0EXJ2_TAT (HIV_Collection.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -3.0 0.0246 71.0 19.0 9.81
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000095564 BTAF1 NonAssociatedWithProgression
ENSG00000108561 C1QBP NonAssociatedWithProgression
ENSG00000105173 CCNE1 o--b
ENSG00000134480 CCNH -o-
ENSG00000082258 CCNT2 o-o
ENSG00000123374 CDK2 oo-
ENSG00000134058 CDK7 o+o
ENSG00000172216 CEBPB +-o
ENSG00000005339 CREBBP NonAssociatedWithProgression
ENSG00000060069 CTDP1 ---
ENSG00000121966 CXCR4 o--b
ENSG00000055332 EIF2AK2 o--a
ENSG00000100393 EP300 o++b
ENSG00000104884 ERCC2 ---
ENSG00000163161 ERCC3 o-o
ENSG00000140564 FURIN o++a
ENSG00000030582 GRN o-o
ENSG00000137947 GTF2B NonAssociatedWithProgression
ENSG00000110768 GTF2H1 o++b
ENSG00000145736 GTF2H2 o++b
ENSG00000111358 GTF2H3 NonAssociatedWithProgression
ENSG00000105968 H2AFV NonAssociatedWithProgression
ENSG00000188486 H2AFX ---
ENSG00000113648 H2AFY NonAssociatedWithProgression
ENSG00000164032 H2AFZ o-o
ENSG00000163041 H3F3A NonAssociatedWithProgression
ENSG00000180573 HIST1H2AC NonAssociatedWithProgression
ENSG00000196787 HIST1H2AG NonAssociatedWithProgression
ENSG00000196226 HIST1H2BB o--b
ENSG00000158373 HIST1H2BD NonAssociatedWithProgression
ENSG00000197459 HIST1H2BH oo-
ENSG00000196176 HIST1H4A ---
ENSG00000184678 HIST2H2BE NonAssociatedWithProgression
ENSG00000125347 IRF1 o+o
ENSG00000138448 ITGAV o++b
ENSG00000150093 ITGB1 NonAssociatedWithProgression
ENSG00000177606 JUN NonAssociatedWithProgression
ENSG00000108424 KPNB1 o--a
ENSG00000113368 LMNB1 o--b
ENSG00000176619 LMNB2 NonAssociatedWithProgression
ENSG00000100030 MAPK1 NonAssociatedWithProgression
ENSG00000102882 MAPK3 o--b
ENSG00000135679 MDM2 -o-
ENSG00000109320 NFKB1 o++a
ENSG00000077150 NFKB2 NonAssociatedWithProgression
ENSG00000181163 NPM1 o--b
ENSG00000143190 POU2F1 NonAssociatedWithProgression
ENSG00000172531 PPP1CA o--a
ENSG00000186298 PPP1CC o--b
ENSG00000117751 PPP1R8 NonAssociatedWithProgression
ENSG00000154229 PRKCA oo+
ENSG00000163932 PRKCD NonAssociatedWithProgression
ENSG00000065675 PRKCQ o+o
ENSG00000067606 PRKCZ ---
ENSG00000115825 PRKD3 o++a
ENSG00000253729 PRKDC o--b
ENSG00000198890 PRMT6 NonAssociatedWithProgression
ENSG00000106588 PSMA2 o+o
ENSG00000041357 PSMA4 -+o
ENSG00000100902 PSMA6 NonAssociatedWithProgression
ENSG00000101182 PSMA7 -+o
ENSG00000008018 PSMB1 o-o
ENSG00000126067 PSMB2 oo-
ENSG00000108294 PSMB3 -+o
ENSG00000100804 PSMB5 o--b
ENSG00000142507 PSMB6 o-o
ENSG00000136930 PSMB7 NonAssociatedWithProgression
ENSG00000204264 PSMB8 o--b
ENSG00000185129 PURA ---
ENSG00000103479 RBL2 NonAssociatedWithProgression
ENSG00000204356 RDBP o-o
ENSG00000173039 RELA o--a
ENSG00000104856 RELB o--b
ENSG00000143947 RPS27A o+o
ENSG00000117118 SDHB NonAssociatedWithProgression
ENSG00000099956 SMARCB1 ---
ENSG00000100603 SNW1 NonAssociatedWithProgression
ENSG00000185591 SP1 o--a
ENSG00000147133 TAF1 NonAssociatedWithProgression
ENSG00000166337 TAF10 o--a
ENSG00000064995 TAF11 o--b
ENSG00000120656 TAF12 o--a
ENSG00000197780 TAF13 o+o
ENSG00000172660 TAF15 o--b
ENSG00000064313 TAF2 o-o
ENSG00000130699 TAF4 o++b
ENSG00000148835 TAF5 o--a
ENSG00000106290 TAF6 NonAssociatedWithProgression
ENSG00000178913 TAF7 o--b
ENSG00000085231 TAF9 o+o
ENSG00000112592 TBP NonAssociatedWithProgression
ENSG00000113649 TCERG1 o--a
ENSG00000101158 TH1L o--b
ENSG00000126351 THRA --o
ENSG00000141510 TP53 o--a
ENSG00000123416 TUBA1B NonAssociatedWithProgression
ENSG00000188229 TUBB2C o--b
ENSG00000176014 TUBB6 NonAssociatedWithProgression
ENSG00000130985 UBA1 o--b
ENSG00000072401 UBE2D1 NonAssociatedWithProgression
ENSG00000185049 WHSC2 o--b
ENSG00000065978 YBX1 o--a
ENSG00000178951 ZBTB7A o--b