PEACHi
GeneSet GTGCCAT,MIR-183 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -3.7 0.03976 84.0 7.0 1.6
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000165029 ABCA1 --o
ENSG00000123505 AMD1 o--a
ENSG00000118454 ANKRD13C oo-
ENSG00000185009 AP3M1 o--a
ENSG00000107863 ARHGAP21 +o+
ENSG00000104880 ARHGEF18 o-o
ENSG00000112182 BACH2 +-o
ENSG00000009954 BAZ1B oo-
ENSG00000104765 BNIP3L NonAssociatedWithProgression
ENSG00000100916 BRMS1L o--b
ENSG00000133639 BTG1 NonAssociatedWithProgression
ENSG00000082153 BZW1 o+-
ENSG00000176749 CDK5R1 NonAssociatedWithProgression
ENSG00000008300 CELSR3 ---
ENSG00000165410 CFL2 o--a
ENSG00000169118 CSNK1G1 o--a
ENSG00000151292 CSNK1G3 o++b
ENSG00000144579 CTDSP1 o--a
ENSG00000144677 CTDSPL o++b
ENSG00000112977 DAP NonAssociatedWithProgression
ENSG00000070413 DGCR2 o-o
ENSG00000143507 DUSP10 NonAssociatedWithProgression
ENSG00000120738 EGR1 NonAssociatedWithProgression
ENSG00000123908 EIF2C2 o--b
ENSG00000143924 EML4 oo-
ENSG00000154380 ENAH o++b
ENSG00000077458 FAM76B NonAssociatedWithProgression
ENSG00000114861 FOXP1 oo-
ENSG00000139926 FRMD6 o++b
ENSG00000143614 GATAD2B ---
ENSG00000174021 GNG5 o+o
ENSG00000113070 HBEGF o++a
ENSG00000112144 ICK o+o
ENSG00000182054 IDH2 NonAssociatedWithProgression
ENSG00000071243 ING3 o--b
ENSG00000169047 IRS1 o--b
ENSG00000150093 ITGB1 NonAssociatedWithProgression
ENSG00000131149 KIAA0182 o--b
ENSG00000146021 KLHL3 o++b
ENSG00000198945 L3MBTL3 NonAssociatedWithProgression
ENSG00000068697 LAPTM4A o++b
ENSG00000072071 LPHN1 ---
ENSG00000070018 LRP6 NonAssociatedWithProgression
ENSG00000085511 MAP3K4 o--a
ENSG00000152601 MBNL1 NonAssociatedWithProgression
ENSG00000139505 MTMR6 o-+
ENSG00000123933 MXD4 ---
ENSG00000071051 NCK2 o--b
ENSG00000113580 NR3C1 o--a
ENSG00000147162 OGT o-o
ENSG00000091039 OSBPL8 o-o
ENSG00000145730 PAM oo+
ENSG00000150593 PDCD4 oo-
ENSG00000249915 PDCD6 NonAssociatedWithProgression
ENSG00000162735 PEX19 --o
ENSG00000070087 PFN2 NonAssociatedWithProgression
ENSG00000043143 PHF15 o--b
ENSG00000156531 PHF6 o++a
ENSG00000144824 PHLDB2 o++b
ENSG00000137193 PIM1 o--b
ENSG00000144283 PKP4 NonAssociatedWithProgression
ENSG00000181690 PLAG1 oo-
ENSG00000126003 PLAGL2 +-o
ENSG00000116095 PLEKHA3 -oo
ENSG00000052126 PLEKHA5 o+o
ENSG00000144231 POLR2D o--b
ENSG00000175175 PPM1E -oo
ENSG00000173457 PPP1R14B o--a
ENSG00000113575 PPP2CA o--b
ENSG00000104695 PPP2CB +o+
ENSG00000221914 PPP2R2A o--b
ENSG00000078304 PPP2R5C NonAssociatedWithProgression
ENSG00000154229 PRKCA oo+
ENSG00000156471 PTDSS1 +-o
ENSG00000088179 PTPN4 o++b
ENSG00000112531 QKI NonAssociatedWithProgression
ENSG00000166128 RAB8B o++b
ENSG00000006451 RALA o-+
ENSG00000160271 RALGDS o--a
ENSG00000117906 RCN2 NonAssociatedWithProgression
ENSG00000134758 RNF138 o--b
ENSG00000177189 RPS6KA3 NonAssociatedWithProgression
ENSG00000151835 SACS o+-
ENSG00000000457 SCYL3 o++b
ENSG00000120742 SERP1 --o
ENSG00000169375 SIN3A o--b
ENSG00000164414 SLC35A1 NonAssociatedWithProgression
ENSG00000070214 SLC44A1 o++a
ENSG00000103056 SMPD3 o--b
ENSG00000028528 SNX1 o++b
ENSG00000149136 SSRP1 o--b
ENSG00000211455 STK38L NonAssociatedWithProgression
ENSG00000140262 TCF12 o--a
ENSG00000106829 TLE4 NonAssociatedWithProgression
ENSG00000134970 TMED7 NonAssociatedWithProgression
ENSG00000120802 TMPO -o-
ENSG00000205542 TMSB4X NonAssociatedWithProgression
ENSG00000154620 TMSB4Y o+o
ENSG00000187653 TMSL3 oo+
ENSG00000140416 TPM1 oo+
ENSG00000143549 TPM3 oo-
ENSG00000067167 TRAM1 NonAssociatedWithProgression
ENSG00000165914 TTC7B -+o
ENSG00000213585 VDAC1 --o
ENSG00000155975 VPS37A +o+
ENSG00000176105 YES1 +-o
ENSG00000180667 YOD1 o--b
ENSG00000119801 YPEL5 NonAssociatedWithProgression
ENSG00000023041 ZDHHC6 NonAssociatedWithProgression
ENSG00000072121 ZFYVE26 o++b
ENSG00000166716 ZNF592 o-o