PEACHi
GeneSet ENVELOPE (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--o -3.1 0.01889 98.0 9.0 3.0
o-o -2.5 0.04365 98.0 16.0 8.22
DownRegulated -3.3 0.00935 98.0 73.0 57.87
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000094914 AAAS o--a
ENSG00000131269 ABCB7 o-o
ENSG00000197150 ABCB8 o-o
ENSG00000033050 ABCF2 o--a
ENSG00000196636 ACN9 o++b
ENSG00000118217 ATF6 o--a
ENSG00000152234 ATP5A1 -o-
ENSG00000110955 ATP5B o--b
ENSG00000165629 ATP5C1 NonAssociatedWithProgression
ENSG00000099624 ATP5D o--a
ENSG00000124172 ATP5E NonAssociatedWithProgression
ENSG00000159199 ATP5G1 NonAssociatedWithProgression
ENSG00000135390 ATP5G2 oo-
ENSG00000154518 ATP5G3 NonAssociatedWithProgression
ENSG00000154723 ATP5J o+o
ENSG00000241837 ATP5O +o+
ENSG00000171791 BCL2 NonAssociatedWithProgression
ENSG00000074582 BCS1L o-o
ENSG00000113734 BNIP1 o--b
ENSG00000140299 BNIP2 NonAssociatedWithProgression
ENSG00000104765 BNIP3L NonAssociatedWithProgression
ENSG00000144559 C3orf31 NonAssociatedWithProgression
ENSG00000165806 CASP7 o-o
ENSG00000094916 CBX5 NonAssociatedWithProgression
ENSG00000117724 CENPF o--a
ENSG00000014919 COX15 NonAssociatedWithProgression
ENSG00000163626 COX18 o--b
ENSG00000172115 CYCS o--b
ENSG00000157349 DDX19B NonAssociatedWithProgression
ENSG00000172893 DHCR7 o--b
ENSG00000132507 EIF5A o--a
ENSG00000102119 EMD o-o
ENSG00000120616 EPC1 o--b
ENSG00000214253 FIS1 --o
ENSG00000119392 GLE1 NonAssociatedWithProgression
ENSG00000128266 GNAZ NonAssociatedWithProgression
ENSG00000138029 HADHB o-o
ENSG00000109854 HTATIP2 o+-
ENSG00000115317 HTRA2 o--a
ENSG00000132305 IMMT NonAssociatedWithProgression
ENSG00000205339 IPO7 NonAssociatedWithProgression
ENSG00000114030 KPNA1 NonAssociatedWithProgression
ENSG00000102753 KPNA3 NonAssociatedWithProgression
ENSG00000108424 KPNB1 o--a
ENSG00000143815 LBR +oo
ENSG00000174106 LEMD3 +-o
ENSG00000113368 LMNB1 o--b
ENSG00000015479 MATR3 -o-
ENSG00000143384 MCL1 o-o
ENSG00000116688 MFN2 o--b
ENSG00000115204 MPV17 --o
ENSG00000115364 MRPL19 NonAssociatedWithProgression
ENSG00000106591 MRPL32 NonAssociatedWithProgression
ENSG00000125459 MSTO1 NonAssociatedWithProgression
ENSG00000128654 MTX2 o++b
ENSG00000141562 NARF NonAssociatedWithProgression
ENSG00000125356 NDUFA1 o+o
ENSG00000186010 NDUFA13 o-o
ENSG00000131495 NDUFA2 o--b
ENSG00000184983 NDUFA6 o++b
ENSG00000139180 NDUFA9 o--a
ENSG00000023228 NDUFS1 o+o
ENSG00000158864 NDUFS2 --o
ENSG00000213619 NDUFS3 NonAssociatedWithProgression
ENSG00000164258 NDUFS4 NonAssociatedWithProgression
ENSG00000115286 NDUFS7 ---
ENSG00000110717 NDUFS8 o--a
ENSG00000167792 NDUFV1 --o
ENSG00000112992 NNT -+o
ENSG00000141458 NPC1 o++b
ENSG00000137404 NRM o--a
ENSG00000111581 NUP107 -+o
ENSG00000069248 NUP133 o+-
ENSG00000124789 NUP153 o+-
ENSG00000030066 NUP160 NonAssociatedWithProgression
ENSG00000126883 NUP214 NonAssociatedWithProgression
ENSG00000093000 NUP50 NonAssociatedWithProgression
ENSG00000138750 NUP54 o-o
ENSG00000213024 NUP62 o--a
ENSG00000108559 NUP88 NonAssociatedWithProgression
ENSG00000110713 NUP98 o--a
ENSG00000102898 NUTF2 --o
ENSG00000132661 NXT1 o--b
ENSG00000105953 OGDH ---
ENSG00000198836 OPA1 o-+
ENSG00000155463 OXA1L +o+
ENSG00000143799 PARP1 o--b
ENSG00000167085 PHB NonAssociatedWithProgression
ENSG00000215021 PHB2 ---
ENSG00000165688 PMPCA o--a
ENSG00000101868 POLA1 NonAssociatedWithProgression
ENSG00000143224 PPOX +o+
ENSG00000080815 PSEN1 o-o
ENSG00000101146 RAE1 -o-
ENSG00000132155 RAF1 NonAssociatedWithProgression
ENSG00000153201 RANBP2 o+o
ENSG00000100401 RANGAP1 o-o
ENSG00000042445 RETSAT oo+
ENSG00000126858 RHOT1 NonAssociatedWithProgression
ENSG00000140983 RHOT2 o--b
ENSG00000115310 RTN4 +oo
ENSG00000136193 SCRN1 --o
ENSG00000073578 SDHA o-o
ENSG00000204370 SDHD NonAssociatedWithProgression
ENSG00000163904 SENP2 o--a
ENSG00000108528 SLC25A11 ---
ENSG00000102743 SLC25A15 NonAssociatedWithProgression
ENSG00000177542 SLC25A22 NonAssociatedWithProgression
ENSG00000169100 SLC25A6 o-o
ENSG00000072310 SREBF1 o--a
ENSG00000116030 SUMO1 NonAssociatedWithProgression
ENSG00000148290 SURF1 o--a
ENSG00000134809 TIMM10 o-o
ENSG00000099800 TIMM13 o--a
ENSG00000134375 TIMM17A -oo
ENSG00000126768 TIMM17B --o
ENSG00000138297 TIMM23 o--a
ENSG00000105197 TIMM50 ---
ENSG00000150779 TIMM8B --o
ENSG00000100575 TIMM9 -+o
ENSG00000058804 TMEM48 NonAssociatedWithProgression
ENSG00000120802 TMPO -o-
ENSG00000100216 TOMM22 o--b
ENSG00000025772 TOMM34 o--a
ENSG00000047410 TPR o+-
ENSG00000204713 TRIM27 o--a
ENSG00000175564 UCP3 NonAssociatedWithProgression
ENSG00000156467 UQCRB o++b
ENSG00000010256 UQCRC1 o--a
ENSG00000173660 UQCRH NonAssociatedWithProgression
ENSG00000213585 VDAC1 --o
ENSG00000165637 VDAC2 -o-
ENSG00000078668 VDAC3 -+o
ENSG00000146457 WTAP o-o
ENSG00000082898 XPO1 o-o
ENSG00000130227 XPO7 o--b