PEACHi
GeneSet ENDOPLASMIC_RETICULUM_MEMBRANE (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o-o -2.6 0.03828 50.0 10.0 4.19
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000214160 ALG3 o--a
ENSG00000159461 AMFR o-o
ENSG00000118217 ATF6 o--a
ENSG00000113734 BNIP1 o--b
ENSG00000168000 BSCL2 ---
ENSG00000165806 CASP7 o-o
ENSG00000188603 CLN3 o++b
ENSG00000129562 DAD1 -oo
ENSG00000244038 DDOST o--a
ENSG00000136986 DERL1 NonAssociatedWithProgression
ENSG00000072849 DERL2 o-o
ENSG00000167130 DOLPP1 NonAssociatedWithProgression
ENSG00000000419 DPM1 o+-
ENSG00000136908 DPM2 o--a
ENSG00000179085 DPM3 o-o
ENSG00000134109 EDEM1 o--b
ENSG00000107566 ERLIN1 o-o
ENSG00000147475 ERLIN2 o+o
ENSG00000151348 EXT2 NonAssociatedWithProgression
ENSG00000051108 HERPUD1 +oo
ENSG00000113161 HMGCR +oo
ENSG00000166598 HSP90B1 NonAssociatedWithProgression
ENSG00000115317 HTRA2 o--a
ENSG00000163463 KRTCAP2 o-o
ENSG00000126777 KTN1 NonAssociatedWithProgression
ENSG00000074695 LMAN1 o-o
ENSG00000114988 LMAN2L o--b
ENSG00000118308 LRMP o--a
ENSG00000102158 MAGT1 o-+
ENSG00000125967 NECAB3 ---
ENSG00000128699 ORMDL1 o++b
ENSG00000165195 PIGA NonAssociatedWithProgression
ENSG00000069943 PIGB o++b
ENSG00000135845 PIGC oo+
ENSG00000151665 PIGF -+o
ENSG00000142892 PIGK -+o
ENSG00000165282 PIGO ---
ENSG00000087111 PIGS o-o
ENSG00000124155 PIGT o--b
ENSG00000101464 PIGU o--a
ENSG00000060642 PIGV NonAssociatedWithProgression
ENSG00000145337 PIGY o+-
ENSG00000102007 PLP2 o--a
ENSG00000130714 POMT1 o++b
ENSG00000042445 RETSAT oo+
ENSG00000163902 RPN1 o-o
ENSG00000118705 RPN2 o--a
ENSG00000115310 RTN4 +oo
ENSG00000121542 SEC22A -o-
ENSG00000111897 SERINC1 o-+
ENSG00000169359 SLC33A1 o++b
ENSG00000198689 SLC9A6 NonAssociatedWithProgression
ENSG00000114902 SPCS1 o-o
ENSG00000072310 SREBF1 o--a
ENSG00000143742 SRP9 NonAssociatedWithProgression
ENSG00000182934 SRPR o--a
ENSG00000134910 STT3A NonAssociatedWithProgression
ENSG00000163527 STT3B o--a
ENSG00000231925 TAPBP ---
ENSG00000160183 TMPRSS3 NonAssociatedWithProgression
ENSG00000160803 UBQLN4 o--a
ENSG00000124164 VAPB NonAssociatedWithProgression