PEACHi
GeneSet ACTGCAG,MIR-17-3P (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -3.6 0.04593 48.0 5.0 0.91
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000132142 ACACA o--b
ENSG00000138107 ACTR1A ---
ENSG00000151458 ANKRD50 NonAssociatedWithProgression
ENSG00000189079 ARID2 NonAssociatedWithProgression
ENSG00000114098 ARMC8 NonAssociatedWithProgression
ENSG00000085185 BCORL1 ---
ENSG00000165288 BRWD3 NonAssociatedWithProgression
ENSG00000145741 BTF3 o--b
ENSG00000101189 C20orf20 ---
ENSG00000145349 CAMK2D NonAssociatedWithProgression
ENSG00000167797 CDK2AP2 ---
ENSG00000080802 CNOT4 ---
ENSG00000113300 CNOT6 +-o
ENSG00000009307 CSDE1 o--b
ENSG00000108654 DDX5 NonAssociatedWithProgression
ENSG00000110367 DDX6 o--b
ENSG00000114867 EIF4G1 ---
ENSG00000213066 FGFR1OP o+-
ENSG00000096060 FKBP5 o--b
ENSG00000137942 FNBP1L o++a
ENSG00000114861 FOXP1 oo-
ENSG00000121964 GTDC1 NonAssociatedWithProgression
ENSG00000110768 GTF2H1 o++b
ENSG00000147099 HDAC8 oo-
ENSG00000100644 HIF1A NonAssociatedWithProgression
ENSG00000149948 HMGA2 oo-
ENSG00000068383 INPP5A -o-
ENSG00000205726 ITSN1 -+o
ENSG00000170852 KBTBD2 oo-
ENSG00000121774 KHDRBS1 NonAssociatedWithProgression
ENSG00000120071 KIAA1267 oo-
ENSG00000102753 KPNA3 NonAssociatedWithProgression
ENSG00000047849 MAP4 o-+
ENSG00000155130 MARCKS +-o
ENSG00000125952 MAX NonAssociatedWithProgression
ENSG00000143995 MEIS1 o++b
ENSG00000176658 MYO1D NonAssociatedWithProgression
ENSG00000136504 MYST2 NonAssociatedWithProgression
ENSG00000186575 NF2 o--b
ENSG00000113580 NR3C1 o--a
ENSG00000078618 NRD1 -+o
ENSG00000147162 OGT o-o
ENSG00000137817 PARP6 +-o
ENSG00000204569 PPP1R10 o--b
ENSG00000113575 PPP2CA o--b
ENSG00000103769 RAB11A -o-
ENSG00000080371 RAB21 o+o
ENSG00000175582 RAB6A o++b
ENSG00000166128 RAB8B o++b
ENSG00000123728 RAP2C o++b
ENSG00000126858 RHOT1 NonAssociatedWithProgression
ENSG00000157450 RNF111 o++b
ENSG00000143376 SNX27 NonAssociatedWithProgression
ENSG00000198369 SPRED2 o--a
ENSG00000101337 TM9SF4 o--a
ENSG00000152332 UHMK1 o--a
ENSG00000077254 USP33 o++b
ENSG00000144560 VGLL4 o--a
ENSG00000136100 VPS36 ---
ENSG00000198492 YTHDF2 o--a
ENSG00000170027 YWHAG o+-
ENSG00000056097 ZFR o--b
ENSG00000102935 ZNF423 o--b
ENSG00000148143 ZNF462 NonAssociatedWithProgression