PEACHi
GeneSet chr4p16 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
+o+ -2.7 0.0213 33.0 5.0 1.35
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000163995 ABLIM2 NonAssociatedWithProgression
ENSG00000087274 ADD1 +o+
ENSG00000249673 C4orf10 NonAssociatedWithProgression
ENSG00000155275 C4orf23 o-o
ENSG00000173013 CCDC96 NonAssociatedWithProgression
ENSG00000186222 CNO NonAssociatedWithProgression
ENSG00000179979 CRIPAK NonAssociatedWithProgression
ENSG00000159692 CTBP1 NonAssociatedWithProgression
ENSG00000145214 DGKQ ---
ENSG00000127418 FGFRL1 NonAssociatedWithProgression
ENSG00000178950 GAK o--a
ENSG00000125388 GRK4 -+o
ENSG00000109519 GRPEL1 o--b
ENSG00000127415 IDUA o--a
ENSG00000152969 JAKMIP1 -+o
ENSG00000170871 KIAA0232 NonAssociatedWithProgression
ENSG00000109787 KLF3 +o+
ENSG00000168924 LETM1 ---
ENSG00000163956 LRPAP1 ---
ENSG00000145220 LYAR o--b
ENSG00000090316 MAEA o+-
ENSG00000013288 MAN2B2 +o+
ENSG00000118579 MED28 o-+
ENSG00000179010 MRFAP1 o+o
ENSG00000178988 MRFAP1L1 -+o
ENSG00000123933 MXD4 ---
ENSG00000185619 PCGF3 o++b
ENSG00000174227 PIGG o++b
ENSG00000157869 RAB28 o--b
ENSG00000063978 RNF4 NonAssociatedWithProgression
ENSG00000163993 S100P +-o
ENSG00000087266 SH3BP2 o-+
ENSG00000125089 SH3TC1 o--b
ENSG00000163950 SLBP NonAssociatedWithProgression
ENSG00000159674 SPON2 o++b
ENSG00000168818 STX18 o--b
ENSG00000013810 TACC3 NonAssociatedWithProgression
ENSG00000132405 TBC1D14 o++a
ENSG00000132406 TMEM128 +o+
ENSG00000168936 TMEM129 o--a
ENSG00000127419 TMEM175 +o+
ENSG00000168884 TNIP2 o--b
ENSG00000071127 WDR1 NonAssociatedWithProgression
ENSG00000109685 WHSC1 o--b
ENSG00000185049 WHSC2 o--b
ENSG00000182903 ZNF721 NonAssociatedWithProgression