PEACHi
GeneSet chr22q13 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--- -3.0 0.01679 68.0 17.0 8.32
o--b -2.4 0.028 68.0 17.0 9.39
DownRegulated -5.6 1.0E-4 68.0 57.0 40.16
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000100412 ACO2 -oo
ENSG00000128165 ADM2 NonAssociatedWithProgression
ENSG00000239900 ADSL -+o
ENSG00000100124 ANKRD54 o--b
ENSG00000243811 APOBEC3D ---
ENSG00000242247 ARFGAP3 ---
ENSG00000128272 ATF4 o--b
ENSG00000130638 ATXN10 o--b
ENSG00000100290 BIK o--a
ENSG00000100425 BRD1 o--b
ENSG00000133466 C1QTNF6 +o+
ENSG00000183172 C22orf32 NonAssociatedWithProgression
ENSG00000100364 C22orf9 o--a
ENSG00000100162 CENPM o--a
ENSG00000100422 CERK o--b
ENSG00000100288 CHKB ---
ENSG00000205560 CPT1B o--a
ENSG00000184164 CRELD2 ---
ENSG00000100197 CYP2D6 ---
ENSG00000100201 DDX17 NonAssociatedWithProgression
ENSG00000100393 EP300 o++b
ENSG00000100376 FAM118A NonAssociatedWithProgression
ENSG00000100083 GGA1 o--b
ENSG00000100351 GRAP2 ---
ENSG00000100226 GTPBP1 o--a
ENSG00000075218 GTSE1 o--b
ENSG00000189060 H1F0 o--b
ENSG00000100429 HDAC10 o--b
ENSG00000100221 JOSD1 o-o
ENSG00000168135 KCNJ4 --o
ENSG00000100395 L3MBTL2 o--b
ENSG00000188636 LDOC1L +-o
ENSG00000008735 MAPK8IP2 o--a
ENSG00000100294 MCAT o--b
ENSG00000100297 MCM5 o--b
ENSG00000100060 MFNG o--a
ENSG00000196588 MKL1 ---
ENSG00000025770 NCAPH2 o--b
ENSG00000184983 NDUFA6 o++b
ENSG00000100101 NOL12 NonAssociatedWithProgression
ENSG00000093000 NUP50 NonAssociatedWithProgression
ENSG00000100266 PACSIN2 NonAssociatedWithProgression
ENSG00000138964 PARVG o--a
ENSG00000056487 PHF21B +-o
ENSG00000100410 PHF5A o--b
ENSG00000100151 PICK1 ---
ENSG00000198355 PIM3 o--a
ENSG00000184381 PLA2G6 ---
ENSG00000100417 PMM1 NonAssociatedWithProgression
ENSG00000100227 POLDIP3 o--a
ENSG00000100142 POLR2F NonAssociatedWithProgression
ENSG00000100413 POLR3H o--a
ENSG00000100401 RANGAP1 o-o
ENSG00000100387 RBX1 o--a
ENSG00000100316 RPL3 -o-
ENSG00000100347 SAMM50 NonAssociatedWithProgression
ENSG00000100241 SBF1 ---
ENSG00000130489 SCO2 o-+
ENSG00000100167 SEPT3 NonAssociatedWithProgression
ENSG00000100092 SH3BP1 --o
ENSG00000100372 SLC25A17 o-+
ENSG00000100335 SMCR7L NonAssociatedWithProgression
ENSG00000198911 SREBF2 ---
ENSG00000100380 ST13 -o-
ENSG00000100321 SYNGR1 oo+
ENSG00000054611 TBC1D22A o--b
ENSG00000100207 TCF20 ---
ENSG00000167074 TEF ---
ENSG00000100354 TNRC6B o+o
ENSG00000100284 TOM1 ---
ENSG00000170638 TRABD ---
ENSG00000100106 TRIOBP +o+
ENSG00000100416 TRMU ---
ENSG00000100271 TTLL1 ---
ENSG00000100304 TTLL12 o--a
ENSG00000128159 TUBGCP6 o--a
ENSG00000100348 TXN2 o--b
ENSG00000196236 XPNPEP3 o--a
ENSG00000100426 ZBED4 o--b
ENSG00000100403 ZC3H7B o--a