PEACHi
GeneSet chr20q11 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -2.0 0.04408 42.0 11.0 5.8
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000101444 AHCY o--a
ENSG00000171456 ASXL1 o--b
ENSG00000171552 BCL2L1 ---
ENSG00000166619 BLCAP NonAssociatedWithProgression
ENSG00000197183 C20orf112 o++a
ENSG00000149639 C20orf117 NonAssociatedWithProgression
ENSG00000101353 C20orf132 -oo
ENSG00000101084 C20orf24 o+o
ENSG00000078699 CBFA2T2 o--a
ENSG00000126001 CEP250 o-o
ENSG00000101421 CHMP4B o--b
ENSG00000149600 COMMD7 oo+
ENSG00000131055 COX4I2 +-o
ENSG00000214078 CPNE1 o--b
ENSG00000132792 CTNNBL1 NonAssociatedWithProgression
ENSG00000101452 DHX35 NonAssociatedWithProgression
ENSG00000080845 DLGAP4 NonAssociatedWithProgression
ENSG00000125971 DYNLRB1 o--a
ENSG00000101412 E2F1 o--b
ENSG00000088298 EDEM2 o--a
ENSG00000101447 FAM83D NonAssociatedWithProgression
ENSG00000100983 GSS NonAssociatedWithProgression
ENSG00000101294 HM13 o--b
ENSG00000125968 ID1 o--a
ENSG00000078747 ITCH o++b
ENSG00000101350 KIF3B o--a
ENSG00000101367 MAPRE1 o--b
ENSG00000198646 NCOA6 o--b
ENSG00000101079 NDRG3 --o
ENSG00000244005 NFS1 NonAssociatedWithProgression
ENSG00000130703 OSBPL2 o++b
ENSG00000088356 PDRG1 o--b
ENSG00000025293 PHF20 o--a
ENSG00000126003 PLAGL2 +-o
ENSG00000101346 POFUT1 -oo
ENSG00000235044 PPIAP3 NonAssociatedWithProgression
ENSG00000101445 PPP1R16B o++a
ENSG00000101417 PXMP4 o-+
ENSG00000125970 RALY o--a
ENSG00000080839 RBL1 +o+
ENSG00000244462 RBM12 o--b
ENSG00000131051 RBM39 o--b
ENSG00000230837 RPL31P2 o-+
ENSG00000171222 SCAND1 o--a
ENSG00000101082 SLA2 o+o
ENSG00000080189 SLC35C2 ---
ENSG00000101109 STK4 NonAssociatedWithProgression
ENSG00000118707 TGIF2 ---
ENSG00000101337 TM9SF4 o--a
ENSG00000078804 TP53INP2 NonAssociatedWithProgression
ENSG00000088325 TPX2 o--b
ENSG00000100991 TRPC4AP +-o
ENSG00000198026 ZNF335 NonAssociatedWithProgression
ENSG00000131061 ZNF341 o-+