PEACHi
GeneSet chr1q21 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -2.4 0.028 83.0 20.0 11.47
DownRegulated -4.2 0.00193 83.0 65.0 49.01
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000162836 ACP6 o-+
ENSG00000143537 ADAM15 ---
ENSG00000160710 ADAR o--a
ENSG00000163382 APOA1BP o--a
ENSG00000132694 ARHGEF11 -+o
ENSG00000116584 ARHGEF2 o--b
ENSG00000143437 ARNT o++b
ENSG00000143515 ATP8B2 o-+
ENSG00000158850 B4GALT3 o--a
ENSG00000116128 BCL9 NonAssociatedWithProgression
ENSG00000178096 BOLA1 o++a
ENSG00000143612 C1orf43 o-o
ENSG00000143443 C1orf56 oo+
ENSG00000160679 C1orf77 o-o
ENSG00000117091 CD48 NonAssociatedWithProgression
ENSG00000197622 CDC42SE1 o--a
ENSG00000143375 CGN ---
ENSG00000131778 CHD1L o--a
ENSG00000173207 CKS1B NonAssociatedWithProgression
ENSG00000176444 CLK2 NonAssociatedWithProgression
ENSG00000143578 CREB3L4 o--a
ENSG00000160741 CRTC2 ---
ENSG00000143387 CTSK oo+
ENSG00000198837 DENND4B o--b
ENSG00000081721 DUSP12 NonAssociatedWithProgression
ENSG00000169242 EFNA1 oo+
ENSG00000143590 EFNA3 ---
ENSG00000243364 EFNA4 o++a
ENSG00000143420 ENSA oo-
ENSG00000117036 ETV3 NonAssociatedWithProgression
ENSG00000143614 GATAD2B ---
ENSG00000143457 GOLPH3L NonAssociatedWithProgression
ENSG00000188092 GPR89B NonAssociatedWithProgression
ENSG00000196644 GPR89C NonAssociatedWithProgression
ENSG00000143575 HAX1 ---
ENSG00000143321 HDGF ---
ENSG00000183558 HIST2H2AA3 o--b
ENSG00000203812 HIST2H2AA4 o--b
ENSG00000220323 HIST2H2BC ---
ENSG00000203819 HIST2H2BD o--b
ENSG00000184678 HIST2H2BE NonAssociatedWithProgression
ENSG00000183941 HIST2H4A ---
ENSG00000182217 HIST2H4B o--b
ENSG00000143621 ILF2 o-o
ENSG00000143624 INTS3 o--a
ENSG00000183856 IQGAP3 o-+
ENSG00000143127 ITGA10 NonAssociatedWithProgression
ENSG00000143543 JTB o-o
ENSG00000183853 KIRREL o--a
ENSG00000152022 LIX1L o-o
ENSG00000143384 MCL1 o-o
ENSG00000213190 MLLT11 o++b
ENSG00000143314 MRPL24 o--b
ENSG00000143436 MRPL9 o-o
ENSG00000173171 MTX1 o--a
ENSG00000185499 MUC1 +-o
ENSG00000163386 NBPF10 ---
ENSG00000152042 NBPF11 o--b
ENSG00000186275 NBPF12 o--b
ENSG00000122497 NBPF14 NonAssociatedWithProgression
ENSG00000203827 NBPF16 o--a
ENSG00000203832 NBPF20 o--b
ENSG00000225241 NBPF8 o++b
ENSG00000168614 NBPF9 o--b
ENSG00000158793 NIT1 o++b
ENSG00000186364 NUDT17 NonAssociatedWithProgression
ENSG00000163113 OTUD7B NonAssociatedWithProgression
ENSG00000178104 PDE4DIP NonAssociatedWithProgression
ENSG00000143627 PKLR NonAssociatedWithProgression
ENSG00000023902 PLEKHO1 NonAssociatedWithProgression
ENSG00000143442 POGZ NonAssociatedWithProgression
ENSG00000186141 POLR3C ---
ENSG00000121851 POLR3GL NonAssociatedWithProgression
ENSG00000143294 PRCC ---
ENSG00000131791 PRKAB2 NonAssociatedWithProgression
ENSG00000117360 PRPF3 o--a
ENSG00000143363 PRUNE +o+
ENSG00000159377 PSMB4 NonAssociatedWithProgression
ENSG00000159352 PSMD4 NonAssociatedWithProgression
ENSG00000131795 RBM8A +-o
ENSG00000143390 RFX5 NonAssociatedWithProgression
ENSG00000143622 RIT1 o+o
ENSG00000143365 RORC o--b
ENSG00000177954 RPS27 o-o
ENSG00000160753 RUSC1 o-o
ENSG00000197747 S100A10 NonAssociatedWithProgression
ENSG00000163191 S100A11 oo-
ENSG00000196754 S100A2 +o+
ENSG00000196420 S100A5 NonAssociatedWithProgression
ENSG00000197956 S100A6 o-o
ENSG00000116521 SCAMP3 o--a
ENSG00000163156 SCNM1 o--a
ENSG00000143252 SDHC o--b
ENSG00000223380 SEC22B NonAssociatedWithProgression
ENSG00000143379 SETDB1 o--b
ENSG00000027869 SH2D2A o--b
ENSG00000160691 SHC1 o--a
ENSG00000143570 SLC39A1 o-o
ENSG00000198952 SMG5 o--b
ENSG00000143376 SNX27 NonAssociatedWithProgression
ENSG00000163479 SSR2 o--b
ENSG00000159164 SV2A o--a
ENSG00000158710 TAGLN2 o--b
ENSG00000182134 TDRKH ---
ENSG00000143549 TPM3 oo-
ENSG00000163462 TRIM46 -oo
ENSG00000143569 UBAP2L o--b
ENSG00000160803 UBQLN4 o--a
ENSG00000163159 VPS72 o--b
ENSG00000143373 ZNF687 ---