PEACHi
GeneSet chr1p34 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -2.8 0.01797 56.0 16.0 7.95
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000116863 ADPRHL2 --o
ENSG00000116337 AMPD2 NonAssociatedWithProgression
ENSG00000116922 C1orf109 o++b
ENSG00000197982 C1orf122 o--a
ENSG00000163866 C1orf212 NonAssociatedWithProgression
ENSG00000164008 C1orf50 +o+
ENSG00000131236 CAP1 o--a
ENSG00000177868 CCDC23 o+o
ENSG00000134690 CDCA8 o--a
ENSG00000171793 CTPS o-o
ENSG00000178028 DMAP1 o--a
ENSG00000132768 DPH2 o--a
ENSG00000070785 EIF2B3 NonAssociatedWithProgression
ENSG00000092847 EIF2C1 -+o
ENSG00000126070 EIF2C3 o+o
ENSG00000134698 EIF2C4 +o+
ENSG00000066322 ELOVL1 ---
ENSG00000204060 FOXO6 NonAssociatedWithProgression
ENSG00000134697 GNL2 ---
ENSG00000116478 HDAC1 ---
ENSG00000126107 HECTD3 NonAssociatedWithProgression
ENSG00000127124 HIVEP3 +-o
ENSG00000178922 HYI o--a
ENSG00000204084 INPP5B NonAssociatedWithProgression
ENSG00000117408 IPO13 NonAssociatedWithProgression
ENSG00000142687 KIAA0319L NonAssociatedWithProgression
ENSG00000142945 KIF2C o--b
ENSG00000162511 LAPTM5 o--b
ENSG00000182866 LCK o-o
ENSG00000157193 LRP8 o--a
ENSG00000132128 LRRC41 o--b
ENSG00000181817 LSM10 NonAssociatedWithProgression
ENSG00000185090 MANEAL NonAssociatedWithProgression
ENSG00000086015 MAST2 o--a
ENSG00000159479 MED8 o--b
ENSG00000132763 MMACHC o--a
ENSG00000142961 MOBKL2C oo+
ENSG00000132781 MUTYH o--a
ENSG00000132780 NASP o--a
ENSG00000020129 NCDN NonAssociatedWithProgression
ENSG00000168653 NDUFS5 o--a
ENSG00000117481 NSUN4 o--a
ENSG00000158006 PAFAH2 o++b
ENSG00000162517 PEF1 o--a
ENSG00000134686 PHC2 ---
ENSG00000117461 PIK3R3 NonAssociatedWithProgression
ENSG00000187980 PLA2G2C o++a
ENSG00000085998 POMGNT1 o-o
ENSG00000127125 PPCS o++a
ENSG00000171960 PPIH o-o
ENSG00000117450 PRDX1 --o
ENSG00000126067 PSMB2 oo-
ENSG00000142949 PTPRF ---
ENSG00000142937 RPS8 NonAssociatedWithProgression
ENSG00000116954 RRAGC +o+
ENSG00000010803 SCMH1 NonAssociatedWithProgression
ENSG00000116560 SFPQ +-o
ENSG00000142669 SH3BGRL3 o--b
ENSG00000163877 SNIP1 +-o
ENSG00000126091 ST3GAL3 --o
ENSG00000196182 STK40 o+o
ENSG00000054118 THRAP3 o--a
ENSG00000159596 TMEM69 +o+
ENSG00000054116 TRAPPC3 o++a
ENSG00000043514 TRIT1 o+-
ENSG00000173660 UQCRH NonAssociatedWithProgression
ENSG00000126088 UROD --o
ENSG00000183520 UTP11L NonAssociatedWithProgression
ENSG00000065978 YBX1 o--a
ENSG00000084073 ZMPSTE24 NonAssociatedWithProgression
ENSG00000197056 ZMYM1 NonAssociatedWithProgression
ENSG00000146463 ZMYM4 NonAssociatedWithProgression
ENSG00000163867 ZMYM6 +o+
ENSG00000187815 ZNF642 o++b
ENSG00000187801 ZNF643 NonAssociatedWithProgression
ENSG00000117010 ZNF684 NonAssociatedWithProgression
ENSG00000164011 ZNF691 NonAssociatedWithProgression
ENSG00000162415 ZSWIM5 o++a