PEACHi
GeneSet chr1p13 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o+o -2.5 0.02637 34.0 6.0 2.01
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000168710 AHCYL1 -+o
ENSG00000163399 ATP1A1 o--a
ENSG00000116459 ATP5F1 NonAssociatedWithProgression
ENSG00000162650 ATXN7L2 ---
ENSG00000116752 BCAS2 o+o
ENSG00000143110 C1orf162 o++a
ENSG00000162639 C1orf59 NonAssociatedWithProgression
ENSG00000173947 C1orf88 NonAssociatedWithProgression
ENSG00000116489 CAPZA1 NonAssociatedWithProgression
ENSG00000116824 CD2 ---
ENSG00000143119 CD53 NonAssociatedWithProgression
ENSG00000116815 CD58 o++b
ENSG00000134255 CEPT1 o++b
ENSG00000064886 CHI3L2 -+o
ENSG00000121940 CLCC1 NonAssociatedWithProgression
ENSG00000162777 DENND2D -+o
ENSG00000162636 FAM102B o+o
ENSG00000143093 FAM40A NonAssociatedWithProgression
ENSG00000065135 GNAI3 NonAssociatedWithProgression
ENSG00000121957 GPSM2 +o+
ENSG00000134184 GSTM1 NonAssociatedWithProgression
ENSG00000213366 GSTM2 NonAssociatedWithProgression
ENSG00000168765 GSTM4 oo+
ENSG00000163349 HIPK1 NonAssociatedWithProgression
ENSG00000143061 IGSF3 o++a
ENSG00000198162 MAN1A2 o+o
ENSG00000155363 MOV10 ---
ENSG00000134250 NOTCH2 o-o
ENSG00000213281 NRAS o--b
ENSG00000085465 OVGP1 o-+
ENSG00000116793 PHTF1 o+o
ENSG00000163344 PMVK o--a
ENSG00000198890 PRMT6 NonAssociatedWithProgression
ENSG00000134186 PRPF38B ---
ENSG00000143106 PSMA5 o--a
ENSG00000134222 PSRC1 NonAssociatedWithProgression
ENSG00000134242 PTPN22 o++b
ENSG00000116473 RAP1A NonAssociatedWithProgression
ENSG00000162775 RBM15 o--a
ENSG00000155366 RHOC --o
ENSG00000081019 RSBN1 o-o
ENSG00000137996 RTCD1 NonAssociatedWithProgression
ENSG00000031698 SARS NonAssociatedWithProgression
ENSG00000085491 SLC25A24 o++b
ENSG00000007341 ST7L -oo
ENSG00000116266 STXBP3 o+o
ENSG00000197780 TAF13 o+o
ENSG00000197323 TRIM33 NonAssociatedWithProgression
ENSG00000116874 WARS2 o-o
ENSG00000085433 WDR47 o-+
ENSG00000116455 WDR77 o--a