PEACHi
GeneSet chr17q11 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--o -2.1 0.0385 40.0 4.0 1.23
DownRegulated -4.0 0.00259 40.0 34.0 23.62
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000108270 AATF o--b
ENSG00000198720 ANKRD13B ---
ENSG00000006125 AP2B1 ---
ENSG00000108578 BLMH NonAssociatedWithProgression
ENSG00000172171 C17orf42 +o+
ENSG00000173065 C17orf63 o--b
ENSG00000108666 C17orf75 +o+
ENSG00000172301 C17orf79 o--a
ENSG00000108349 CASC3 o-o
ENSG00000126653 CCDC55 o--a
ENSG00000176390 CRLF3 NonAssociatedWithProgression
ENSG00000167536 DHRS13 o--a
ENSG00000168259 DNAJC7 ---
ENSG00000132591 ERAL1 o--b
ENSG00000126860 EVI2A +-o
ENSG00000132589 FLOT2 o--a
ENSG00000108587 GOSR1 NonAssociatedWithProgression
ENSG00000161405 IKZF3 -o-
ENSG00000007202 KIAA0100 o--a
ENSG00000002834 LASP1 o--b
ENSG00000005156 LIG3 NonAssociatedWithProgression
ENSG00000176681 LRRC37A NonAssociatedWithProgression
ENSG00000185158 LRRC37B o+o
ENSG00000034152 MAP2K3 ---
ENSG00000176658 MYO1D NonAssociatedWithProgression
ENSG00000108784 NAGLU ---
ENSG00000196712 NF1 o+o
ENSG00000087095 NLK oo+
ENSG00000108256 NUFIP2 --o
ENSG00000109118 PHF12 o--a
ENSG00000004142 POLDIP2 o-o
ENSG00000167525 PROCA1 ---
ENSG00000185379 RAD51L3 o--b
ENSG00000187456 RDM1 ---
ENSG00000126858 RHOT1 NonAssociatedWithProgression
ENSG00000181481 RNF135 --o
ENSG00000198242 RPL23A o--a
ENSG00000004139 SARM1 o-o
ENSG00000132581 SDF2 NonAssociatedWithProgression
ENSG00000238649 SNORD42A oo-
ENSG00000141298 SSH2 NonAssociatedWithProgression
ENSG00000131748 STARD3 ---
ENSG00000126561 STAT5A o-o
ENSG00000173757 STAT5B ---
ENSG00000109111 SUPT6H o--b
ENSG00000172660 TAF15 o--b
ENSG00000126351 THRA --o
ENSG00000109084 TMEM97 o--b
ENSG00000167543 TP53I13 NonAssociatedWithProgression
ENSG00000109103 UNC119 --o
ENSG00000108651 UTP6 NonAssociatedWithProgression