PEACHi
GeneSet chr10q24 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -3.1 0.01679 37.0 12.0 5.11
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000138107 ACTR1A ---
ENSG00000059573 ALDH18A1 o--b
ENSG00000213390 ARHGAP19 o-o
ENSG00000214435 AS3MT o++a
ENSG00000119986 AVPI1 o++a
ENSG00000196072 BLOC1S2 NonAssociatedWithProgression
ENSG00000166167 BTRC --o
ENSG00000154473 BUB3 o--a
ENSG00000155640 C10orf12 NonAssociatedWithProgression
ENSG00000166272 C10orf26 ---
ENSG00000166024 C10orf28 NonAssociatedWithProgression
ENSG00000166275 C10orf32 o++a
ENSG00000120029 C10orf76 o--a
ENSG00000138180 CEP55 o++b
ENSG00000213341 CHUK NonAssociatedWithProgression
ENSG00000014919 COX15 NonAssociatedWithProgression
ENSG00000107874 CUEDC2 --o
ENSG00000119929 CUTC o+o
ENSG00000107554 DNMBP o--b
ENSG00000171311 EXOSC1 NonAssociatedWithProgression
ENSG00000026103 FAS NonAssociatedWithProgression
ENSG00000107872 FBXL15 o--b
ENSG00000107829 FBXW4 o--a
ENSG00000107862 GBF1 o-o
ENSG00000120053 GOT1 NonAssociatedWithProgression
ENSG00000166135 HIF1AN NonAssociatedWithProgression
ENSG00000166189 HPS6 o--a
ENSG00000138160 KIF11 o+-
ENSG00000196233 LCOR NonAssociatedWithProgression
ENSG00000198728 LDB1 o--b
ENSG00000155254 MARVELD1 ---
ENSG00000198408 MGEA5 o++b
ENSG00000119950 MXI1 +-o
ENSG00000077150 NFKB2 NonAssociatedWithProgression
ENSG00000166197 NOLC1 o--b
ENSG00000107833 NPM3 NonAssociatedWithProgression
ENSG00000076685 NT5C2 o--b
ENSG00000156374 PCGF6 o+o
ENSG00000148843 PDCD11 NonAssociatedWithProgression
ENSG00000150593 PDCD4 oo-
ENSG00000186862 PDZD7 NonAssociatedWithProgression
ENSG00000122861 PLAU +o+
ENSG00000148840 PPRC1 o--b
ENSG00000075826 SEC31B NonAssociatedWithProgression
ENSG00000095539 SEMA4G NonAssociatedWithProgression
ENSG00000156398 SFXN2 o--b
ENSG00000107819 SFXN3 NonAssociatedWithProgression
ENSG00000155287 SLC25A28 o--b
ENSG00000212464 SNORA12 o--b
ENSG00000107882 SUFU o--b
ENSG00000148835 TAF5 o--a
ENSG00000077147 TM9SF3 o--b
ENSG00000165886 UBTD1 NonAssociatedWithProgression
ENSG00000173915 USMG5 o+o
ENSG00000171307 ZDHHC16 NonAssociatedWithProgression
ENSG00000155256 ZFYVE27 ---