PEACHi
GeneSet V$OCT1_07 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
-+o -5.2 0.01046 38.0 9.0 1.77
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000143322 ABL2 NonAssociatedWithProgression
ENSG00000148700 ADD3 o--b
ENSG00000128271 ADORA2A o--a
ENSG00000167522 ANKRD11 o--b
ENSG00000171456 ASXL1 o--b
ENSG00000149311 ATM NonAssociatedWithProgression
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000183337 BCOR o--a
ENSG00000132640 BTBD3 o+o
ENSG00000197183 C20orf112 o++a
ENSG00000145781 COMMD10 -+o
ENSG00000113742 CPEB4 NonAssociatedWithProgression
ENSG00000205758 CRYZL1 o++b
ENSG00000169118 CSNK1G1 o--a
ENSG00000154639 CXADR NonAssociatedWithProgression
ENSG00000150764 DIXDC1 NonAssociatedWithProgression
ENSG00000109911 ELP4 NonAssociatedWithProgression
ENSG00000203879 GDI1 o-o
ENSG00000184216 IRAK1 o--a
ENSG00000205726 ITSN1 -+o
ENSG00000153814 JAZF1 ---
ENSG00000185760 KCNQ5 o++a
ENSG00000111731 KIAA0528 o--b
ENSG00000101350 KIF3B o--a
ENSG00000143013 LMO4 -+o
ENSG00000055609 MLL3 NonAssociatedWithProgression
ENSG00000069869 NEDD4 -+o
ENSG00000067141 NEO1 o++a
ENSG00000162599 NFIA NonAssociatedWithProgression
ENSG00000131697 NPHP4 ---
ENSG00000112664 NUDT3 o--a
ENSG00000170917 NUDT6 o++b
ENSG00000182621 PLCB1 -+o
ENSG00000134242 PTPN22 o++b
ENSG00000116191 RALGPS2 oo+
ENSG00000137040 RANBP6 o--a
ENSG00000159216 RUNX1 o--b
ENSG00000153130 SCOC NonAssociatedWithProgression
ENSG00000136193 SCRN1 --o
ENSG00000155926 SLA o+-
ENSG00000004864 SLC25A13 NonAssociatedWithProgression
ENSG00000165283 STOML2 ---
ENSG00000128872 TMOD2 -+o
ENSG00000116783 TNNI3K -+o
ENSG00000141232 TOB1 NonAssociatedWithProgression
ENSG00000131323 TRAF3 -+o
ENSG00000124496 TRERF1 --o
ENSG00000104833 TUBB4 ---
ENSG00000114062 UBE3A NonAssociatedWithProgression
ENSG00000048028 USP28 -+o
ENSG00000015532 XYLT2 --o
ENSG00000205189 ZBTB10 NonAssociatedWithProgression
ENSG00000163848 ZNF148 NonAssociatedWithProgression
ENSG00000118267 ZNF271 NonAssociatedWithProgression