PEACHi
GeneSet V$AP2GAMMA_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -4.0 0.01354 75.0 59.0 44.29
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000105290 APLP1 oo+
ENSG00000084234 APLP2 o+o
ENSG00000117713 ARID1A o--b
ENSG00000241553 ARPC4 o--b
ENSG00000169136 ATF5 ---
ENSG00000100554 ATP6V1D NonAssociatedWithProgression
ENSG00000204463 BAT3 ---
ENSG00000069399 BCL3 NonAssociatedWithProgression
ENSG00000198663 C6orf89 ---
ENSG00000198668 CALM1 NonAssociatedWithProgression
ENSG00000183741 CBX6 o--b
ENSG00000112149 CD83 -+o
ENSG00000079335 CDC14A o+o
ENSG00000125817 CENPB o--b
ENSG00000079432 CIC NonAssociatedWithProgression
ENSG00000173786 CNP ---
ENSG00000113742 CPEB4 NonAssociatedWithProgression
ENSG00000102974 CTCF o--b
ENSG00000171604 CXXC5 o+-
ENSG00000070413 DGCR2 o-o
ENSG00000058866 DGKG NonAssociatedWithProgression
ENSG00000178498 DTX3 o-o
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000171570 EGLN2 NonAssociatedWithProgression
ENSG00000134001 EIF2S1 o--a
ENSG00000105722 ERF ---
ENSG00000178974 FBXO34 oo-
ENSG00000106080 FKBP14 -+o
ENSG00000181027 FKRP o+o
ENSG00000090554 FLT3LG +o+
ENSG00000007237 GAS7 ---
ENSG00000089639 GMIP --o
ENSG00000204590 GNL1 o--a
ENSG00000170412 GPRC5C NonAssociatedWithProgression
ENSG00000100644 HIF1A NonAssociatedWithProgression
ENSG00000152795 HNRPDL oo-
ENSG00000163453 IGFBP7 NonAssociatedWithProgression
ENSG00000104951 IL4I1 NonAssociatedWithProgression
ENSG00000008083 JARID2 o-o
ENSG00000130522 JUND o--b
ENSG00000173801 JUP o-o
ENSG00000184261 KCNK12 o--a
ENSG00000121210 KIAA0922 o-o
ENSG00000118922 KLF12 o+o
ENSG00000169926 KLF13 oo-
ENSG00000198728 LDB1 o--b
ENSG00000005156 LIG3 NonAssociatedWithProgression
ENSG00000143013 LMO4 -+o
ENSG00000157193 LRP8 o--a
ENSG00000126934 MAP2K2 o--a
ENSG00000173327 MAP3K11 ---
ENSG00000100060 MFNG o--a
ENSG00000099875 MKNK2 o--b
ENSG00000123933 MXD4 ---
ENSG00000067141 NEO1 o++a
ENSG00000102908 NFAT5 o--b
ENSG00000072736 NFATC3 o--a
ENSG00000147862 NFIB NonAssociatedWithProgression
ENSG00000074181 NOTCH3 o--b
ENSG00000177463 NR2C2 NonAssociatedWithProgression
ENSG00000113580 NR3C1 o--a
ENSG00000213024 NUP62 o--a
ENSG00000182379 NXPH4 NonAssociatedWithProgression
ENSG00000122884 P4HA1 o--b
ENSG00000070756 PABPC1 o--b
ENSG00000090621 PABPC4 o--a
ENSG00000120913 PDLIM2 ---
ENSG00000134686 PHC2 ---
ENSG00000102007 PLP2 o--a
ENSG00000175175 PPM1E -oo
ENSG00000204576 PRR3 o--b
ENSG00000112655 PTK7 o--a
ENSG00000187514 PTMA o--b
ENSG00000144724 PTPRG NonAssociatedWithProgression
ENSG00000105538 RASIP1 o-o
ENSG00000167771 RCOR2 NonAssociatedWithProgression
ENSG00000104856 RELB o--b
ENSG00000067900 ROCK1 o+o
ENSG00000153574 RPIA o--a
ENSG00000204231 RXRB NonAssociatedWithProgression
ENSG00000102098 SCML2 NonAssociatedWithProgression
ENSG00000155287 SLC25A28 o--b
ENSG00000112473 SLC39A7 o-o
ENSG00000157106 SMG1 o+o
ENSG00000115904 SOS1 -+o
ENSG00000105866 SP4 NonAssociatedWithProgression
ENSG00000008294 SPAG9 oo-
ENSG00000168610 STAT3 o--b
ENSG00000168286 THAP11 o--b
ENSG00000164296 TIGD6 NonAssociatedWithProgression
ENSG00000124496 TRERF1 --o
ENSG00000130726 TRIM28 o--a
ENSG00000144935 TRPC1 NonAssociatedWithProgression
ENSG00000186591 UBE2H NonAssociatedWithProgression
ENSG00000130725 UBE2M o--a
ENSG00000108312 UBTF o--a
ENSG00000111962 UST NonAssociatedWithProgression
ENSG00000198492 YTHDF2 o--a
ENSG00000162702 ZNF281 o+o
ENSG00000198026 ZNF335 NonAssociatedWithProgression
ENSG00000180233 ZNRF2 o++b