PEACHi
GeneSet The citric acid (TCA) cycle and respiratory electron transport (Pathways_-_Reactome.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o-o -2.4 0.035 85.0 14.0 7.13
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000100412 ACO2 -oo
ENSG00000152234 ATP5A1 -o-
ENSG00000110955 ATP5B o--b
ENSG00000165629 ATP5C1 NonAssociatedWithProgression
ENSG00000099624 ATP5D o--a
ENSG00000124172 ATP5E NonAssociatedWithProgression
ENSG00000116459 ATP5F1 NonAssociatedWithProgression
ENSG00000159199 ATP5G1 NonAssociatedWithProgression
ENSG00000154723 ATP5J o+o
ENSG00000241468 ATP5J2 NonAssociatedWithProgression
ENSG00000167283 ATP5L NonAssociatedWithProgression
ENSG00000241837 ATP5O +o+
ENSG00000172270 BSG ---
ENSG00000131143 COX4I1 NonAssociatedWithProgression
ENSG00000178741 COX5A o--a
ENSG00000135940 COX5B ---
ENSG00000111775 COX6A1 o-+
ENSG00000126267 COX6B1 NonAssociatedWithProgression
ENSG00000164919 COX6C NonAssociatedWithProgression
ENSG00000115944 COX7A2L ---
ENSG00000131174 COX7B o+o
ENSG00000127184 COX7C NonAssociatedWithProgression
ENSG00000176340 COX8A o-o
ENSG00000062485 CS +-o
ENSG00000179091 CYC1 ---
ENSG00000172115 CYCS o--b
ENSG00000180902 D2HGDH NonAssociatedWithProgression
ENSG00000150768 DLAT NonAssociatedWithProgression
ENSG00000091140 DLD NonAssociatedWithProgression
ENSG00000119689 DLST o--a
ENSG00000140374 ETFA NonAssociatedWithProgression
ENSG00000171503 ETFDH -+o
ENSG00000091483 FH o+-
ENSG00000182054 IDH2 NonAssociatedWithProgression
ENSG00000166411 IDH3A ---
ENSG00000101365 IDH3B NonAssociatedWithProgression
ENSG00000067829 IDH3G ---
ENSG00000087299 L2HGDH o++b
ENSG00000134333 LDHA +-o
ENSG00000111716 LDHB o-o
ENSG00000146701 MDH2 --o
ENSG00000198899 MT-ATP6 +-o
ENSG00000198804 MT-CO1 ---
ENSG00000198712 MT-CO2 NonAssociatedWithProgression
ENSG00000198938 MT-CO3 o--a
ENSG00000198727 MT-CYB o--b
ENSG00000198888 MT-ND1 o--b
ENSG00000198763 MT-ND2 o--b
ENSG00000198840 MT-ND3 o-+
ENSG00000198886 MT-ND4 o-o
ENSG00000198786 MT-ND5 ---
ENSG00000198695 MT-ND6 o--b
ENSG00000125356 NDUFA1 o+o
ENSG00000130414 NDUFA10 -o-
ENSG00000174886 NDUFA11 o-o
ENSG00000184752 NDUFA12 o+o
ENSG00000186010 NDUFA13 o-o
ENSG00000131495 NDUFA2 o--b
ENSG00000170906 NDUFA3 o--a
ENSG00000189043 NDUFA4 -+o
ENSG00000128609 NDUFA5 NonAssociatedWithProgression
ENSG00000184983 NDUFA6 o++b
ENSG00000167774 NDUFA7 o-o
ENSG00000119421 NDUFA8 oo+
ENSG00000139180 NDUFA9 o--a
ENSG00000183648 NDUFB1 -+o
ENSG00000140990 NDUFB10 -o-
ENSG00000147123 NDUFB11 o-o
ENSG00000090266 NDUFB2 -oo
ENSG00000119013 NDUFB3 o-o
ENSG00000065518 NDUFB4 o-+
ENSG00000136521 NDUFB5 --o
ENSG00000099795 NDUFB7 o--a
ENSG00000166136 NDUFB8 o-o
ENSG00000147684 NDUFB9 NonAssociatedWithProgression
ENSG00000151366 NDUFC2 -o-
ENSG00000023228 NDUFS1 o+o
ENSG00000158864 NDUFS2 --o
ENSG00000213619 NDUFS3 NonAssociatedWithProgression
ENSG00000164258 NDUFS4 NonAssociatedWithProgression
ENSG00000168653 NDUFS5 o--a
ENSG00000115286 NDUFS7 ---
ENSG00000110717 NDUFS8 o--a
ENSG00000167792 NDUFV1 --o
ENSG00000178127 NDUFV2 o--a
ENSG00000160194 NDUFV3 o--a
ENSG00000112992 NNT -+o
ENSG00000105953 OGDH ---
ENSG00000131828 PDHA1 o+-
ENSG00000168291 PDHB o+o
ENSG00000110435 PDHX o+o
ENSG00000152256 PDK1 NonAssociatedWithProgression
ENSG00000067992 PDK3 o++b
ENSG00000164951 PDP1 o++b
ENSG00000073578 SDHA o-o
ENSG00000117118 SDHB NonAssociatedWithProgression
ENSG00000143252 SDHC o--b
ENSG00000204370 SDHD NonAssociatedWithProgression
ENSG00000155380 SLC16A1 o--b
ENSG00000141526 SLC16A3 o-o
ENSG00000136143 SUCLA2 -+o
ENSG00000163541 SUCLG1 o-o
ENSG00000172340 SUCLG2 NonAssociatedWithProgression
ENSG00000175567 UCP2 o--a
ENSG00000175564 UCP3 NonAssociatedWithProgression
ENSG00000184076 UQCR10 NonAssociatedWithProgression
ENSG00000127540 UQCR11 ---
ENSG00000156467 UQCRB o++b
ENSG00000010256 UQCRC1 o--a
ENSG00000140740 UQCRC2 +-o
ENSG00000169021 UQCRFS1 o-o
ENSG00000173660 UQCRH NonAssociatedWithProgression
ENSG00000164405 UQCRQ o-o