PEACHi
GeneSet Respiratory electron transport (Pathways_-_Reactome.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o-o -2.7 0.02256 56.0 11.0 4.7
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000131143 COX4I1 NonAssociatedWithProgression
ENSG00000178741 COX5A o--a
ENSG00000135940 COX5B ---
ENSG00000111775 COX6A1 o-+
ENSG00000126267 COX6B1 NonAssociatedWithProgression
ENSG00000164919 COX6C NonAssociatedWithProgression
ENSG00000115944 COX7A2L ---
ENSG00000131174 COX7B o+o
ENSG00000127184 COX7C NonAssociatedWithProgression
ENSG00000176340 COX8A o-o
ENSG00000179091 CYC1 ---
ENSG00000172115 CYCS o--b
ENSG00000140374 ETFA NonAssociatedWithProgression
ENSG00000171503 ETFDH -+o
ENSG00000198804 MT-CO1 ---
ENSG00000198712 MT-CO2 NonAssociatedWithProgression
ENSG00000198938 MT-CO3 o--a
ENSG00000198727 MT-CYB o--b
ENSG00000198888 MT-ND1 o--b
ENSG00000198763 MT-ND2 o--b
ENSG00000198840 MT-ND3 o-+
ENSG00000198886 MT-ND4 o-o
ENSG00000198786 MT-ND5 ---
ENSG00000198695 MT-ND6 o--b
ENSG00000125356 NDUFA1 o+o
ENSG00000130414 NDUFA10 -o-
ENSG00000174886 NDUFA11 o-o
ENSG00000184752 NDUFA12 o+o
ENSG00000186010 NDUFA13 o-o
ENSG00000131495 NDUFA2 o--b
ENSG00000170906 NDUFA3 o--a
ENSG00000189043 NDUFA4 -+o
ENSG00000128609 NDUFA5 NonAssociatedWithProgression
ENSG00000184983 NDUFA6 o++b
ENSG00000167774 NDUFA7 o-o
ENSG00000119421 NDUFA8 oo+
ENSG00000139180 NDUFA9 o--a
ENSG00000183648 NDUFB1 -+o
ENSG00000140990 NDUFB10 -o-
ENSG00000147123 NDUFB11 o-o
ENSG00000090266 NDUFB2 -oo
ENSG00000119013 NDUFB3 o-o
ENSG00000065518 NDUFB4 o-+
ENSG00000136521 NDUFB5 --o
ENSG00000099795 NDUFB7 o--a
ENSG00000166136 NDUFB8 o-o
ENSG00000147684 NDUFB9 NonAssociatedWithProgression
ENSG00000151366 NDUFC2 -o-
ENSG00000023228 NDUFS1 o+o
ENSG00000158864 NDUFS2 --o
ENSG00000213619 NDUFS3 NonAssociatedWithProgression
ENSG00000164258 NDUFS4 NonAssociatedWithProgression
ENSG00000168653 NDUFS5 o--a
ENSG00000115286 NDUFS7 ---
ENSG00000110717 NDUFS8 o--a
ENSG00000167792 NDUFV1 --o
ENSG00000178127 NDUFV2 o--a
ENSG00000160194 NDUFV3 o--a
ENSG00000073578 SDHA o-o
ENSG00000117118 SDHB NonAssociatedWithProgression
ENSG00000143252 SDHC o--b
ENSG00000204370 SDHD NonAssociatedWithProgression
ENSG00000184076 UQCR10 NonAssociatedWithProgression
ENSG00000127540 UQCR11 ---
ENSG00000156467 UQCRB o++b
ENSG00000010256 UQCRC1 o--a
ENSG00000140740 UQCRC2 +-o
ENSG00000169021 UQCRFS1 o-o
ENSG00000173660 UQCRH NonAssociatedWithProgression
ENSG00000164405 UQCRQ o-o