PEACHi
GeneSet RIBOSOME (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -3.9 0.00581 27.0 11.0 3.83
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000100823 APEX1 NonAssociatedWithProgression
ENSG00000149806 FAU o-o
ENSG00000102081 FMR1 o+-
ENSG00000159111 MRPL10 o--a
ENSG00000183093 MRPL12 ---
ENSG00000214026 MRPL23 ---
ENSG00000185608 MRPL40 NonAssociatedWithProgression
ENSG00000182154 MRPL41 ---
ENSG00000198015 MRPL42 o--a
ENSG00000111639 MRPL51 NonAssociatedWithProgression
ENSG00000172590 MRPL52 oo+
ENSG00000162910 MRPL55 o--a
ENSG00000048544 MRPS10 -o-
ENSG00000181991 MRPS11 o--a
ENSG00000128626 MRPS12 o--a
ENSG00000116898 MRPS15 o--b
ENSG00000182180 MRPS16 --o
ENSG00000096080 MRPS18A NonAssociatedWithProgression
ENSG00000163319 MRPS18C NonAssociatedWithProgression
ENSG00000175110 MRPS22 o--a
ENSG00000062582 MRPS24 o--a
ENSG00000147586 MRPS28 o+o
ENSG00000061794 MRPS35 o--a
ENSG00000134056 MRPS36 -+o
ENSG00000108256 NUFIP2 --o
ENSG00000142541 RPL13A NonAssociatedWithProgression
ENSG00000174748 RPL15 o--a
ENSG00000131469 RPL27 NonAssociatedWithProgression
ENSG00000148303 RPL7A -o-
ENSG00000163682 RPL9 NonAssociatedWithProgression
ENSG00000142534 RPS11 o--a
ENSG00000198034 RPS4X NonAssociatedWithProgression
ENSG00000171863 RPS7 o--a
ENSG00000125844 RRBP1 ---
ENSG00000120742 SERP1 --o
ENSG00000167881 SRP68 o-+