PEACHi
GeneSet NUCLEAR_CHROMOSOME (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -2.5 0.04694 31.0 25.0 18.31
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000102977 ACD o+-
ENSG00000085224 ATRX -oo
ENSG00000108468 CBX1 o++a
ENSG00000094916 CBX5 NonAssociatedWithProgression
ENSG00000149554 CHEK1 o+o
ENSG00000131165 CHMP1A o--a
ENSG00000175595 ERCC4 o-o
ENSG00000113648 H2AFY NonAssociatedWithProgression
ENSG00000147099 HDAC8 oo-
ENSG00000164104 HMGB2 o--b
ENSG00000177606 JUN NonAssociatedWithProgression
ENSG00000124702 KLHDC3 o--a
ENSG00000138095 LRPPRC NonAssociatedWithProgression
ENSG00000166508 MCM7 o--b
ENSG00000155438 MKI67IP NonAssociatedWithProgression
ENSG00000165271 NOL6 o--b
ENSG00000083635 NUFIP1 NonAssociatedWithProgression
ENSG00000145730 PAM oo+
ENSG00000140451 PIF1 ---
ENSG00000101868 POLA1 NonAssociatedWithProgression
ENSG00000185129 PURA ---
ENSG00000146676 PURB o--a
ENSG00000051180 RAD51 NonAssociatedWithProgression
ENSG00000180198 RCC1 o--a
ENSG00000214022 REPIN1 o--a
ENSG00000117748 RPA2 oo-
ENSG00000106399 RPA3 o++b
ENSG00000073584 SMARCE1 -oo
ENSG00000072501 SMC1A o--a
ENSG00000136824 SMC2 -+o
ENSG00000066923 STAG3 o--b
ENSG00000101945 SUV39H1 o--a
ENSG00000161860 SYCE2 o--a
ENSG00000166848 TERF2IP o--b
ENSG00000075131 TIPIN NonAssociatedWithProgression
ENSG00000131462 TUBG1 --o
ENSG00000103275 UBE2I o--a
ENSG00000214717 ZBED1 ---
ENSG00000122515 ZMIZ2 o--b
ENSG00000179456 ZNF238 o-o