PEACHi
GeneSet MITOCHONDRIAL_ENVELOPE (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--o -3.5 0.01045 58.0 7.0 1.78
DownRegulated -2.6 0.03878 58.0 44.0 34.25
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000131269 ABCB7 o-o
ENSG00000197150 ABCB8 o-o
ENSG00000033050 ABCF2 o--a
ENSG00000196636 ACN9 o++b
ENSG00000152234 ATP5A1 -o-
ENSG00000110955 ATP5B o--b
ENSG00000165629 ATP5C1 NonAssociatedWithProgression
ENSG00000099624 ATP5D o--a
ENSG00000124172 ATP5E NonAssociatedWithProgression
ENSG00000159199 ATP5G1 NonAssociatedWithProgression
ENSG00000135390 ATP5G2 oo-
ENSG00000154518 ATP5G3 NonAssociatedWithProgression
ENSG00000154723 ATP5J o+o
ENSG00000241837 ATP5O +o+
ENSG00000171791 BCL2 NonAssociatedWithProgression
ENSG00000074582 BCS1L o-o
ENSG00000144559 C3orf31 NonAssociatedWithProgression
ENSG00000165806 CASP7 o-o
ENSG00000014919 COX15 NonAssociatedWithProgression
ENSG00000163626 COX18 o--b
ENSG00000172115 CYCS o--b
ENSG00000214253 FIS1 --o
ENSG00000138029 HADHB o-o
ENSG00000115317 HTRA2 o--a
ENSG00000132305 IMMT NonAssociatedWithProgression
ENSG00000143384 MCL1 o-o
ENSG00000116688 MFN2 o--b
ENSG00000115204 MPV17 --o
ENSG00000106591 MRPL32 NonAssociatedWithProgression
ENSG00000125459 MSTO1 NonAssociatedWithProgression
ENSG00000128654 MTX2 o++b
ENSG00000125356 NDUFA1 o+o
ENSG00000186010 NDUFA13 o-o
ENSG00000131495 NDUFA2 o--b
ENSG00000184983 NDUFA6 o++b
ENSG00000139180 NDUFA9 o--a
ENSG00000023228 NDUFS1 o+o
ENSG00000158864 NDUFS2 --o
ENSG00000213619 NDUFS3 NonAssociatedWithProgression
ENSG00000164258 NDUFS4 NonAssociatedWithProgression
ENSG00000115286 NDUFS7 ---
ENSG00000110717 NDUFS8 o--a
ENSG00000167792 NDUFV1 --o
ENSG00000112992 NNT -+o
ENSG00000105953 OGDH ---
ENSG00000198836 OPA1 o-+
ENSG00000155463 OXA1L +o+
ENSG00000167085 PHB NonAssociatedWithProgression
ENSG00000215021 PHB2 ---
ENSG00000165688 PMPCA o--a
ENSG00000143224 PPOX +o+
ENSG00000132155 RAF1 NonAssociatedWithProgression
ENSG00000126858 RHOT1 NonAssociatedWithProgression
ENSG00000140983 RHOT2 o--b
ENSG00000073578 SDHA o-o
ENSG00000204370 SDHD NonAssociatedWithProgression
ENSG00000108528 SLC25A11 ---
ENSG00000102743 SLC25A15 NonAssociatedWithProgression
ENSG00000177542 SLC25A22 NonAssociatedWithProgression
ENSG00000169100 SLC25A6 o-o
ENSG00000148290 SURF1 o--a
ENSG00000134809 TIMM10 o-o
ENSG00000099800 TIMM13 o--a
ENSG00000134375 TIMM17A -oo
ENSG00000126768 TIMM17B --o
ENSG00000138297 TIMM23 o--a
ENSG00000105197 TIMM50 ---
ENSG00000150779 TIMM8B --o
ENSG00000100575 TIMM9 -+o
ENSG00000100216 TOMM22 o--b
ENSG00000025772 TOMM34 o--a
ENSG00000175564 UCP3 NonAssociatedWithProgression
ENSG00000156467 UQCRB o++b
ENSG00000010256 UQCRC1 o--a
ENSG00000173660 UQCRH NonAssociatedWithProgression
ENSG00000213585 VDAC1 --o
ENSG00000165637 VDAC2 -o-
ENSG00000078668 VDAC3 -+o