PEACHi
GeneSet KEGG_PEROXISOME (Pathways_-_KEGGBioCarta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--o -3.4 0.02028 33.0 5.0 1.01
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000101986 ABCD1 NonAssociatedWithProgression
ENSG00000117528 ABCD3 NonAssociatedWithProgression
ENSG00000119688 ABCD4 NonAssociatedWithProgression
ENSG00000060971 ACAA1 o+-
ENSG00000101473 ACOT8 ---
ENSG00000161533 ACOX1 NonAssociatedWithProgression
ENSG00000151726 ACSL1 NonAssociatedWithProgression
ENSG00000123983 ACSL3 NonAssociatedWithProgression
ENSG00000068366 ACSL4 o+-
ENSG00000018510 AGPS ---
ENSG00000242110 AMACR -oo
ENSG00000121691 CAT -+o
ENSG00000005469 CROT NonAssociatedWithProgression
ENSG00000242612 DECR2 --o
ENSG00000157326 DHRS4 o--b
ENSG00000104823 ECH1 o--a
ENSG00000120915 EPHX2 o-o
ENSG00000197601 FAR1 o--a
ENSG00000116906 GNPAT NonAssociatedWithProgression
ENSG00000197448 GSTK1 o-+
ENSG00000131373 HACL1 NonAssociatedWithProgression
ENSG00000117305 HMGCL --o
ENSG00000133835 HSD17B4 -+o
ENSG00000182054 IDH2 NonAssociatedWithProgression
ENSG00000103150 MLYCD NonAssociatedWithProgression
ENSG00000115204 MPV17 --o
ENSG00000110921 MVK ---
ENSG00000213965 NUDT19 o++a
ENSG00000198721 PECI o++a
ENSG00000115425 PECR NonAssociatedWithProgression
ENSG00000127980 PEX1 +-o
ENSG00000157911 PEX10 ---
ENSG00000108733 PEX12 o++b
ENSG00000162928 PEX13 o+o
ENSG00000142655 PEX14 o++b
ENSG00000162735 PEX19 --o
ENSG00000164751 PEX2 +o+
ENSG00000034693 PEX3 NonAssociatedWithProgression
ENSG00000139197 PEX5 NonAssociatedWithProgression
ENSG00000107537 PHYH oo+
ENSG00000163344 PMVK o--a
ENSG00000117450 PRDX1 --o
ENSG00000126432 PRDX5 o--a
ENSG00000101417 PXMP4 o-+
ENSG00000116171 SCP2 o++b
ENSG00000100372 SLC25A17 o-+
ENSG00000142168 SOD1 NonAssociatedWithProgression
ENSG00000112096 SOD2 o++b