PEACHi
GeneSet GTTGNYNNRGNAAC_UNKNOWN (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o+o -3.7 0.03976 29.0 7.0 1.72
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000113966 ARL6 o+o
ENSG00000143882 ATP6V1C2 ---
ENSG00000117475 BLZF1 NonAssociatedWithProgression
ENSG00000132640 BTBD3 o+o
ENSG00000159079 C21orf59 ---
ENSG00000100865 CINP NonAssociatedWithProgression
ENSG00000086061 DNAJA1 ---
ENSG00000117395 EBNA1BP2 NonAssociatedWithProgression
ENSG00000155849 ELMO1 o+o
ENSG00000109911 ELP4 NonAssociatedWithProgression
ENSG00000181027 FKRP o+o
ENSG00000102393 GLA ---
ENSG00000172354 GNB2 ---
ENSG00000114988 LMAN2L o--b
ENSG00000123562 MORF4L2 NonAssociatedWithProgression
ENSG00000108852 MPP2 NonAssociatedWithProgression
ENSG00000169992 NLGN2 o-o
ENSG00000143156 NME7 o+o
ENSG00000165494 PCF11 oo-
ENSG00000102007 PLP2 o--a
ENSG00000221988 PPT2 o--a
ENSG00000159335 PTMS o--a
ENSG00000134644 PUM1 o--a
ENSG00000008853 RHOBTB2 NonAssociatedWithProgression
ENSG00000152464 RPP38 o+o
ENSG00000148341 SH3GLB2 ---
ENSG00000109062 SLC9A3R1 o--a
ENSG00000158480 SPATA2 NonAssociatedWithProgression
ENSG00000173757 STAT5B ---
ENSG00000165283 STOML2 ---
ENSG00000090372 STRN4 o--b
ENSG00000168818 STX18 o--b
ENSG00000185875 THNSL1 o++b
ENSG00000100926 TM9SF1 o-+
ENSG00000067369 TP53BP1 o+o
ENSG00000104833 TUBB4 ---
ENSG00000198382 UVRAG o++a
ENSG00000165861 ZFYVE1 NonAssociatedWithProgression