PEACHi
GeneSet CHROMOSOME_ORGANIZATION_AND_BIOGENESIS (GO_-_Biological_Process.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -4.0 0.00327 68.0 54.0 40.16
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000102977 ACD o+-
ENSG00000100813 ACIN1 ---
ENSG00000136518 ACTL6A o--a
ENSG00000117713 ARID1A o--b
ENSG00000111875 ASF1A NonAssociatedWithProgression
ENSG00000171634 BPTF NonAssociatedWithProgression
ENSG00000094880 CDC23 NonAssociatedWithProgression
ENSG00000146670 CDCA5 o--b
ENSG00000138778 CENPE NonAssociatedWithProgression
ENSG00000153044 CENPH oo-
ENSG00000167670 CHAF1A o--b
ENSG00000159259 CHAF1B o-o
ENSG00000131165 CHMP1A o--a
ENSG00000005339 CREBBP NonAssociatedWithProgression
ENSG00000013573 DDX11 o--a
ENSG00000130826 DKC1 o--b
ENSG00000181090 EHMT1 NonAssociatedWithProgression
ENSG00000175595 ERCC4 o-o
ENSG00000135476 ESPL1 o-+
ENSG00000106462 EZH2 NonAssociatedWithProgression
ENSG00000116478 HDAC1 ---
ENSG00000100429 HDAC10 o--b
ENSG00000163517 HDAC11 -oo
ENSG00000196591 HDAC2 NonAssociatedWithProgression
ENSG00000171720 HDAC3 ---
ENSG00000068024 HDAC4 o--b
ENSG00000094631 HDAC6 o--a
ENSG00000147099 HDAC8 oo-
ENSG00000119969 HELLS +o+
ENSG00000149929 HIRIP3 o--a
ENSG00000137309 HMGA1 o--b
ENSG00000149948 HMGA2 oo-
ENSG00000189403 HMGB1 o--b
ENSG00000086758 HUWE1 o-o
ENSG00000167842 MIS12 o+o
ENSG00000095002 MSH2 +oo
ENSG00000149480 MTA2 ---
ENSG00000103510 MYST1 o--b
ENSG00000083168 MYST3 +-o
ENSG00000156650 MYST4 NonAssociatedWithProgression
ENSG00000187109 NAP1L1 +-o
ENSG00000205531 NAP1L4 ---
ENSG00000132780 NASP o--a
ENSG00000104320 NBN NonAssociatedWithProgression
ENSG00000121152 NCAPH o--a
ENSG00000080986 NDC80 o++b
ENSG00000165671 NSD1 NonAssociatedWithProgression
ENSG00000137804 NUSAP1 NonAssociatedWithProgression
ENSG00000145730 PAM oo+
ENSG00000163939 PBRM1 NonAssociatedWithProgression
ENSG00000083642 PDS5B NonAssociatedWithProgression
ENSG00000167085 PHB NonAssociatedWithProgression
ENSG00000140451 PIF1 ---
ENSG00000128513 POT1 o++b
ENSG00000132600 PRMT7 o--a
ENSG00000110958 PTGES3 o--b
ENSG00000113522 RAD50 NonAssociatedWithProgression
ENSG00000162521 RBBP4 NonAssociatedWithProgression
ENSG00000239306 RBM14 o--a
ENSG00000035928 RFC1 o--b
ENSG00000100784 RPS6KA5 NonAssociatedWithProgression
ENSG00000048649 RSF1 +-o
ENSG00000160633 SAFB o--b
ENSG00000182568 SATB1 o--a
ENSG00000119335 SET o--b
ENSG00000096717 SIRT1 +-o
ENSG00000068903 SIRT2 --o
ENSG00000124523 SIRT5 --o
ENSG00000173473 SMARCC1 o--a
ENSG00000139613 SMARCC2 --o
ENSG00000066117 SMARCD1 NonAssociatedWithProgression
ENSG00000073584 SMARCE1 -oo
ENSG00000072501 SMC1A o--a
ENSG00000113810 SMC4 o+-
ENSG00000070366 SMG6 ---
ENSG00000066923 STAG3 o--b
ENSG00000092201 SUPT16H o--a
ENSG00000213246 SUPT4H1 o--a
ENSG00000162227 TAF6L ---
ENSG00000129566 TEP1 +o+
ENSG00000132604 TERF2 o--a
ENSG00000166848 TERF2IP o--b
ENSG00000092330 TINF2 o--b
ENSG00000198586 TLK1 NonAssociatedWithProgression
ENSG00000131747 TOP2A o--b
ENSG00000177889 UBE2N o--a
ENSG00000147548 WHSC1L1 o--b
ENSG00000086827 ZW10 NonAssociatedWithProgression
ENSG00000122952 ZWINT o-o