PEACHi
GeneSet CGTSACG_V$PAX3_B (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
-oo -3.5 0.04593 45.0 5.0 0.92
o--b -4.3 0.01708 45.0 16.0 6.22
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000137845 ADAM10 NonAssociatedWithProgression
ENSG00000131503 ANKHD1 o--b
ENSG00000006125 AP2B1 ---
ENSG00000119866 BCL11A ---
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000157764 BRAF oo-
ENSG00000158636 C11orf30 NonAssociatedWithProgression
ENSG00000196227 C20orf177 o++b
ENSG00000127022 CANX NonAssociatedWithProgression
ENSG00000147044 CASK o++b
ENSG00000183741 CBX6 o--b
ENSG00000124762 CDKN1A oo-
ENSG00000008405 CRY1 NonAssociatedWithProgression
ENSG00000102974 CTCF o--b
ENSG00000166266 CUL5 o--b
ENSG00000174953 DHX36 NonAssociatedWithProgression
ENSG00000134109 EDEM1 o--b
ENSG00000120738 EGR1 NonAssociatedWithProgression
ENSG00000012660 ELOVL5 NonAssociatedWithProgression
ENSG00000120616 EPC1 o--b
ENSG00000100083 GGA1 o--b
ENSG00000198814 GK -oo
ENSG00000087460 GNAS NonAssociatedWithProgression
ENSG00000110768 GTF2H1 o++b
ENSG00000205581 HMGN1 o+o
ENSG00000103415 HMOX2 o--b
ENSG00000110756 HPS5 o++b
ENSG00000104365 IKBKB o++a
ENSG00000205339 IPO7 NonAssociatedWithProgression
ENSG00000049323 LTBP1 -oo
ENSG00000148187 MRRF o--a
ENSG00000090266 NDUFB2 -oo
ENSG00000180370 PAK2 ---
ENSG00000081154 PCNP NonAssociatedWithProgression
ENSG00000124299 PEPD o--b
ENSG00000070501 POLB o+-
ENSG00000105568 PPP2R1A o--b
ENSG00000221988 PPT2 o--a
ENSG00000187514 PTMA o--b
ENSG00000076201 PTPN23 o--b
ENSG00000108384 RAD51C o+-
ENSG00000172613 RAD9A o--b
ENSG00000101773 RBBP8 NonAssociatedWithProgression
ENSG00000119446 RBM18 -+o
ENSG00000104856 RELB o--b
ENSG00000163933 RFT1 --o
ENSG00000118518 RNF146 o++b
ENSG00000134294 SLC38A2 oo-
ENSG00000073584 SMARCE1 -oo
ENSG00000057252 SOAT1 NonAssociatedWithProgression
ENSG00000136854 STXBP1 -oo
ENSG00000092201 SUPT16H o--a
ENSG00000064995 TAF11 o--b
ENSG00000173334 TRIB1 o--b
ENSG00000138592 USP8 o+-
ENSG00000100219 XBP1 -+o
ENSG00000136758 YME1L1 NonAssociatedWithProgression
ENSG00000067646 ZFY NonAssociatedWithProgression
ENSG00000074755 ZZEF1 ---
ENSG00000036549 ZZZ3 o+-