PEACHi
GeneSet chr17q25 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--- -5.2 3.9E-4 66.0 21.0 8.08
DownRegulated -8.1 0.0 66.0 59.0 38.98
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000184009 ACTG1 ---
ENSG00000183077 AFMID NonAssociatedWithProgression
ENSG00000141552 ANAPC11 NonAssociatedWithProgression
ENSG00000141522 ARHGDIA ---
ENSG00000214087 ARL16 NonAssociatedWithProgression
ENSG00000125449 ARMC7 o-o
ENSG00000169696 ASPSCR1 o--b
ENSG00000141577 AZI1 ---
ENSG00000175711 B3GNTL1 --o
ENSG00000175866 BAIAP2 NonAssociatedWithProgression
ENSG00000089685 BIRC5 ---
ENSG00000167302 C17orf56 -o-
ENSG00000178927 C17orf62 o--b
ENSG00000185504 C17orf70 ---
ENSG00000141219 C17orf80 NonAssociatedWithProgression
ENSG00000234912 C17orf86 +o+
ENSG00000171302 CANT1 o--b
ENSG00000141582 CBX4 o+-
ENSG00000141570 CBX8 ---
ENSG00000176155 CCDC57 ---
ENSG00000167851 CD300A NonAssociatedWithProgression
ENSG00000173762 CD7 ---
ENSG00000176108 CHMP6 o--a
ENSG00000141551 CSNK1D o--a
ENSG00000169738 DCXR o--a
ENSG00000169718 DUS1L o--a
ENSG00000182473 EXOC7 --o
ENSG00000185262 FAM100B o--b
ENSG00000133193 FAM104A o--a
ENSG00000169710 FASN o--b
ENSG00000141560 FN3KRP NonAssociatedWithProgression
ENSG00000141568 FOXK2 o--a
ENSG00000171298 GAA o--a
ENSG00000125447 GGA3 NonAssociatedWithProgression
ENSG00000170412 GPRC5C NonAssociatedWithProgression
ENSG00000169727 GPS1 ---
ENSG00000132475 H3F3B o--b
ENSG00000169660 HEXDC --o
ENSG00000185359 HGS o--b
ENSG00000189159 HN1 o-+
ENSG00000167862 ICT1 NonAssociatedWithProgression
ENSG00000132470 ITGB4 ---
ENSG00000180901 KCTD2 o--b
ENSG00000177728 KIAA0195 o--b
ENSG00000169683 LRRC45 ---
ENSG00000197063 MAFG ---
ENSG00000125457 MIF4GD NonAssociatedWithProgression
ENSG00000183093 MRPL12 ---
ENSG00000182534 MXRA7 NonAssociatedWithProgression
ENSG00000141562 NARF NonAssociatedWithProgression
ENSG00000109065 NAT9 o+-
ENSG00000185269 NOTUM NonAssociatedWithProgression
ENSG00000125458 NT5C o-o
ENSG00000125450 NUP85 o--b
ENSG00000185624 P4HB o--a
ENSG00000185813 PCYT2 NonAssociatedWithProgression
ENSG00000087157 PGS1 o--a
ENSG00000183010 PYCR1 o-o
ENSG00000129646 QRICH2 ---
ENSG00000169750 RAC3 ---
ENSG00000108469 RECQL5 NonAssociatedWithProgression
ENSG00000169733 RFNG o--a
ENSG00000129667 RHBDF2 -+o
ENSG00000161526 SAP30BP o--b
ENSG00000129657 SEC14L1 o--b
ENSG00000184640 SEPT9 o--b
ENSG00000187531 SIRT7 ---
ENSG00000141526 SLC16A3 o-o
ENSG00000183048 SLC25A10 ---
ENSG00000125454 SLC25A19 o--a
ENSG00000167881 SRP68 o-+
ENSG00000169689 STRA13 --o
ENSG00000188612 SUMO2 NonAssociatedWithProgression
ENSG00000108639 SYNGR2 o--a
ENSG00000141556 TBCD o--b
ENSG00000183684 THOC4 -o-
ENSG00000035862 TIMP2 NonAssociatedWithProgression
ENSG00000141524 TMC6 ---
ENSG00000167895 TMC8 o--a
ENSG00000109066 TMEM104 o--a
ENSG00000132481 TRIM47 NonAssociatedWithProgression
ENSG00000141569 TRIM65 NonAssociatedWithProgression
ENSG00000182173 TSEN54 ---
ENSG00000175931 UBE2O NonAssociatedWithProgression
ENSG00000092929 UNC13D ---
ENSG00000055483 USP36 ---
ENSG00000132471 WBP2 NonAssociatedWithProgression
ENSG00000141580 WDR45L o++b