PEACHi
GeneSet V$ARP1_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -4.0 0.01354 40.0 34.0 23.62
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000149925 ALDOA o--b
ENSG00000100280 AP1B1 o--b
ENSG00000204444 APOM o--a
ENSG00000171681 ATF7IP ---
ENSG00000017260 ATP2C1 oo-
ENSG00000156030 C14orf43 o--a
ENSG00000116667 C1orf21 o++a
ENSG00000147044 CASK o++b
ENSG00000108091 CCDC6 o+-
ENSG00000176749 CDK5R1 NonAssociatedWithProgression
ENSG00000165410 CFL2 o--a
ENSG00000173575 CHD2 o--b
ENSG00000106404 CLDN15 o--b
ENSG00000214078 CPNE1 o--b
ENSG00000105516 DBP ---
ENSG00000205250 E2F4 ---
ENSG00000143420 ENSA oo-
ENSG00000108306 FBXL20 NonAssociatedWithProgression
ENSG00000137478 FCHSD2 NonAssociatedWithProgression
ENSG00000020181 GPR124 o++a
ENSG00000181773 GPR3 ---
ENSG00000137070 IL11RA NonAssociatedWithProgression
ENSG00000184216 IRAK1 o--a
ENSG00000104369 JPH1 NonAssociatedWithProgression
ENSG00000214655 KIAA0913 ---
ENSG00000126259 KIRREL2 ---
ENSG00000168056 LTBP3 ---
ENSG00000159479 MED8 o--b
ENSG00000108292 MLLT6 o--a
ENSG00000204568 MRPS18B o--a
ENSG00000166507 NDST2 o-o
ENSG00000087095 NLK oo+
ENSG00000105851 PIK3CG o++b
ENSG00000160783 PMF1 o-o
ENSG00000175482 POLD4 --o
ENSG00000177380 PPFIA3 ---
ENSG00000175175 PPM1E -oo
ENSG00000125970 RALY o--a
ENSG00000105538 RASIP1 o-o
ENSG00000122257 RBBP6 ---
ENSG00000170633 RNF34 NonAssociatedWithProgression
ENSG00000020633 RUNX3 o--b
ENSG00000136603 SKIL NonAssociatedWithProgression
ENSG00000139613 SMARCC2 --o
ENSG00000118707 TGIF2 ---
ENSG00000124496 TRERF1 --o
ENSG00000005889 ZFX o--b
ENSG00000178764 ZHX2 NonAssociatedWithProgression