PEACHi
GeneSet TRANSCRIPTION_FACTOR_COMPLEX (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -3.7 0.00473 49.0 40.0 28.94
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000075624 ACTB o--b
ENSG00000136518 ACTL6A o--a
ENSG00000157500 APPL1 o+o
ENSG00000136044 APPL2 NonAssociatedWithProgression
ENSG00000133794 ARNTL NonAssociatedWithProgression
ENSG00000107223 EDF1 o--b
ENSG00000104884 ERCC2 ---
ENSG00000163161 ERCC3 o-o
ENSG00000134899 ERCC5 NonAssociatedWithProgression
ENSG00000167491 GATAD2A o--a
ENSG00000125651 GTF2F1 o--a
ENSG00000110768 GTF2H1 o++b
ENSG00000077235 GTF3C1 o--b
ENSG00000115207 GTF3C2 NonAssociatedWithProgression
ENSG00000119041 GTF3C3 -oo
ENSG00000125484 GTF3C4 NonAssociatedWithProgression
ENSG00000148308 GTF3C5 o--a
ENSG00000155115 GTF3C6 NonAssociatedWithProgression
ENSG00000116478 HDAC1 ---
ENSG00000100429 HDAC10 o--b
ENSG00000163517 HDAC11 -oo
ENSG00000196591 HDAC2 NonAssociatedWithProgression
ENSG00000171720 HDAC3 ---
ENSG00000068024 HDAC4 o--b
ENSG00000094631 HDAC6 o--a
ENSG00000147099 HDAC8 oo-
ENSG00000144485 HES6 ---
ENSG00000100644 HIF1A NonAssociatedWithProgression
ENSG00000137309 HMGA1 o--b
ENSG00000168556 ING2 NonAssociatedWithProgression
ENSG00000116679 IVNS1ABP NonAssociatedWithProgression
ENSG00000143013 LMO4 -+o
ENSG00000112282 MED23 NonAssociatedWithProgression
ENSG00000155868 MED7 NonAssociatedWithProgression
ENSG00000198646 NCOA6 o--b
ENSG00000001167 NFYA NonAssociatedWithProgression
ENSG00000120837 NFYB o-o
ENSG00000066136 NFYC NonAssociatedWithProgression
ENSG00000170485 NPAS2 o-+
ENSG00000135365 PHF21A ---
ENSG00000160783 PMF1 o-o
ENSG00000239306 RBM14 o--a
ENSG00000173039 RELA o--a
ENSG00000175792 RUVBL1 ---
ENSG00000183207 RUVBL2 o--a
ENSG00000150459 SAP18 o-o
ENSG00000164105 SAP30 o++b
ENSG00000175387 SMAD2 NonAssociatedWithProgression
ENSG00000141646 SMAD4 o--b
ENSG00000165684 SNAPC4 o--b
ENSG00000113387 SUB1 +-o
ENSG00000111707 SUDS3 o--a
ENSG00000147133 TAF1 NonAssociatedWithProgression
ENSG00000166337 TAF10 o--a
ENSG00000064995 TAF11 o--b
ENSG00000120656 TAF12 o--a
ENSG00000197780 TAF13 o+o
ENSG00000064313 TAF2 o-o
ENSG00000130699 TAF4 o++b
ENSG00000148835 TAF5 o--a
ENSG00000106290 TAF6 NonAssociatedWithProgression
ENSG00000162227 TAF6L ---
ENSG00000178913 TAF7 o--b
ENSG00000137413 TAF8 NonAssociatedWithProgression
ENSG00000085231 TAF9 o+o
ENSG00000112592 TBP NonAssociatedWithProgression
ENSG00000196367 TRRAP o-o
ENSG00000196419 XRCC6 o--b