PEACHi
GeneSet Synthesis and interconversion of nucleotide di- and triphosphates (Pathways_-_Reactome.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -2.2 0.04176 13.0 5.0 1.85
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000106992 AK1 NonAssociatedWithProgression
ENSG00000004455 AK2 o--a
ENSG00000162368 CMPK1 NonAssociatedWithProgression
ENSG00000171793 CTPS o-o
ENSG00000168393 DTYMK o-o
ENSG00000173221 GLRX o+o
ENSG00000104687 GSR ---
ENSG00000143774 GUK1 o--a
ENSG00000239672 NME1 o--a
ENSG00000011052 NME2 NonAssociatedWithProgression
ENSG00000103202 NME4 --o
ENSG00000167325 RRM1 o--a
ENSG00000171848 RRM2 o--a
ENSG00000048392 RRM2B -+o
ENSG00000136810 TXN o++b
ENSG00000198431 TXNRD1 o+o