PEACHi
GeneSet S_PHASE (GO_-_Biological_Process.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -3.8 0.02583 8.0 5.0 1.14
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000097007 ABL1 o--a
ENSG00000166313 APBB1 o-o
ENSG00000097046 CDC7 NonAssociatedWithProgression
ENSG00000111328 CDK2AP1 --o
ENSG00000131165 CHMP1A o--a
ENSG00000013573 DDX11 o--a
ENSG00000101868 POLA1 NonAssociatedWithProgression
ENSG00000062822 POLD1 o--a
ENSG00000081237 PTPRC o+o
ENSG00000180198 RCC1 o--a
ENSG00000075131 TIPIN NonAssociatedWithProgression