GeneSet SA_G1_AND_S_PHASES (Pathways_-_KEGGBioCarta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
AllGenesAssociatedWithProgression -1.7976931348623157E308 0.0 12.0 12.0 8.74
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000143761 ARF1 o--b
ENSG00000134287 ARF3 o--a
ENSG00000123374 CDK2 oo-
ENSG00000135446 CDK4 o--a
ENSG00000124762 CDKN1A oo-
ENSG00000111276 CDKN1B +o+
ENSG00000172757 CFL1 o-o
ENSG00000101412 E2F1 o--b
ENSG00000007968 E2F2 o--a
ENSG00000135679 MDM2 -o-
ENSG00000132661 NXT1 o--b
ENSG00000141510 TP53 o--a