PEACHi
GeneSet CONDENSED_NUCLEAR_CHROMOSOME (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -4.0 0.00461 10.0 6.0 1.42
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000149554 CHEK1 o+o
ENSG00000131165 CHMP1A o--a
ENSG00000138095 LRPPRC NonAssociatedWithProgression
ENSG00000155438 MKI67IP NonAssociatedWithProgression
ENSG00000165271 NOL6 o--b
ENSG00000051180 RAD51 NonAssociatedWithProgression
ENSG00000180198 RCC1 o--a
ENSG00000072501 SMC1A o--a
ENSG00000066923 STAG3 o--b
ENSG00000101945 SUV39H1 o--a
ENSG00000161860 SYCE2 o--a
ENSG00000131462 TUBG1 --o
ENSG00000103275 UBE2I o--a