PEACHi
GeneSet BIOCARTA_GCR_PATHWAY (Pathways_-_KEGGBioCarta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -3.7 0.01538 11.0 6.0 1.56
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000142208 AKT1 ---
ENSG00000135046 ANXA1 o+-
ENSG00000198668 CALM1 NonAssociatedWithProgression
ENSG00000143933 CALM2 o--a
ENSG00000160014 CALM3 o--a
ENSG00000087460 GNAS NonAssociatedWithProgression
ENSG00000078369 GNB1 o--a
ENSG00000080824 HSP90AA1 NonAssociatedWithProgression
ENSG00000109320 NFKB1 o++a
ENSG00000113580 NR3C1 o--a
ENSG00000121879 PIK3CA +-o
ENSG00000105851 PIK3CG o++b
ENSG00000145675 PIK3R1 o--a
ENSG00000173039 RELA o--a