PEACHi
GeneSet ATPASE_ACTIVITY_COUPLED (GO_-_Molecular_Function.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -2.6 0.04853 50.0 14.0 6.91
DownRegulated -2.9 0.04946 50.0 39.0 29.53
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000131269 ABCB7 o-o
ENSG00000117528 ABCD3 NonAssociatedWithProgression
ENSG00000119688 ABCD4 NonAssociatedWithProgression
ENSG00000204574 ABCF1 o--b
ENSG00000160179 ABCG1 --o
ENSG00000058063 ATP11B NonAssociatedWithProgression
ENSG00000163399 ATP1A1 o--a
ENSG00000143153 ATP1B1 -oo
ENSG00000069849 ATP1B3 o--b
ENSG00000174437 ATP2A2 -o-
ENSG00000074370 ATP2A3 o--b
ENSG00000070961 ATP2B1 +-o
ENSG00000058668 ATP2B4 o++b
ENSG00000017260 ATP2C1 oo-
ENSG00000185883 ATP6V0C o--b
ENSG00000113732 ATP6V0E1 o--b
ENSG00000147416 ATP6V1B2 o-o
ENSG00000155097 ATP6V1C1 o++b
ENSG00000165240 ATP7A o++b
ENSG00000123191 ATP7B o++b
ENSG00000198563 BAT1 o--a
ENSG00000171634 BPTF NonAssociatedWithProgression
ENSG00000156261 CCT8 o--b
ENSG00000153922 CHD1 o--b
ENSG00000173575 CHD2 o--b
ENSG00000170004 CHD3 o--a
ENSG00000111642 CHD4 o--b
ENSG00000166855 CLPX NonAssociatedWithProgression
ENSG00000100201 DDX17 NonAssociatedWithProgression
ENSG00000088205 DDX18 NonAssociatedWithProgression
ENSG00000064703 DDX20 NonAssociatedWithProgression
ENSG00000165732 DDX21 -o-
ENSG00000174243 DDX23 -o-
ENSG00000215301 DDX3X oo-
ENSG00000136271 DDX56 o--b
ENSG00000140829 DHX38 o--a
ENSG00000067596 DHX8 o--a
ENSG00000135829 DHX9 +-o
ENSG00000141543 EIF4A3 NonAssociatedWithProgression
ENSG00000049167 ERCC8 -+o
ENSG00000137731 FXYD2 o-+
ENSG00000145907 G3BP1 ---
ENSG00000186625 KATNA1 NonAssociatedWithProgression
ENSG00000140854 KATNB1 o--b
ENSG00000133026 MYH10 o--a
ENSG00000100345 MYH9 -o-
ENSG00000092841 MYL6 o-o
ENSG00000127980 PEX1 +-o
ENSG00000140451 PIF1 ---
ENSG00000051180 RAD51 NonAssociatedWithProgression
ENSG00000197275 RAD54B NonAssociatedWithProgression
ENSG00000017797 RALBP1 --o
ENSG00000162521 RBBP4 NonAssociatedWithProgression
ENSG00000004700 RECQL NonAssociatedWithProgression
ENSG00000133119 RFC3 -oo
ENSG00000183207 RUVBL2 o--a
ENSG00000204351 SKIV2L -oo
ENSG00000138375 SMARCAL1 -+o
ENSG00000231925 TAPBP ---
ENSG00000131747 TOP2A o--b
ENSG00000116830 TTF2 oo+
ENSG00000005007 UPF1 o--b
ENSG00000119541 VPS4B NonAssociatedWithProgression
ENSG00000079246 XRCC5 -o-
ENSG00000196419 XRCC6 o--b