PEACHi
GeneSet chr22q11 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo+ -2.7 0.02218 36.0 4.0 0.93
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000128271 ADORA2A o--a
ENSG00000100077 ADRBK2 o--b
ENSG00000099968 BCL2L13 oo+
ENSG00000015475 BID -oo
ENSG00000138867 C22orf13 o--a
ENSG00000183597 C22orf25 NonAssociatedWithProgression
ENSG00000215012 C22orf29 NonAssociatedWithProgression
ENSG00000099991 CABIN1 o--b
ENSG00000093072 CECR1 -oo
ENSG00000069998 CECR5 o-o
ENSG00000093010 COMT NonAssociatedWithProgression
ENSG00000099942 CRKL o--b
ENSG00000099977 DDT NonAssociatedWithProgression
ENSG00000100056 DGCR14 ---
ENSG00000070413 DGCR2 o-o
ENSG00000183628 DGCR6 --o
ENSG00000128185 DGCR6L --o
ENSG00000128191 DGCR8 NonAssociatedWithProgression
ENSG00000184708 EIF4ENIF1 o-o
ENSG00000128266 GNAZ NonAssociatedWithProgression
ENSG00000185838 GNB1L o--a
ENSG00000169635 HIC2 o--a
ENSG00000100084 HIRA ---
ENSG00000177663 IL17RA NonAssociatedWithProgression
ENSG00000099910 KLHL22 oo+
ENSG00000100068 LRP5L o-+
ENSG00000099949 LZTR1 o++b
ENSG00000100030 MAPK1 NonAssociatedWithProgression
ENSG00000240972 MIF o--a
ENSG00000185608 MRPL40 NonAssociatedWithProgression
ENSG00000100023 PPIL2 o--a
ENSG00000100034 PPM1F oo+
ENSG00000099901 RANBP1 NonAssociatedWithProgression
ENSG00000040608 RTN4R ---
ENSG00000128228 SDF2L1 o--a
ENSG00000184702 SEPT5 NonAssociatedWithProgression
ENSG00000133460 SLC2A11 o--a
ENSG00000099956 SMARCB1 ---
ENSG00000099940 SNAP29 o-+
ENSG00000100028 SNRPD3 o-o
ENSG00000184436 THAP7 ---
ENSG00000100038 TOP3B o-o
ENSG00000184470 TXNRD2 --o
ENSG00000185651 UBE2L3 o--b
ENSG00000070010 UFD1L o+-
ENSG00000196419 XRCC6 o--b
ENSG00000100027 YPEL1 NonAssociatedWithProgression
ENSG00000099904 ZDHHC8 oo+