PEACHi
GeneSet chr16p11 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -2.5 0.02637 42.0 12.0 5.8
DownRegulated -3.7 0.00449 42.0 35.0 24.8
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000140691 ARMC5 o--b
ENSG00000168488 ATXN2L ---
ENSG00000099385 BCL7C ---
ENSG00000183336 BOLA2 oo+
ENSG00000169627 BOLA2B oo+
ENSG00000185928 C16orf53 o--b
ENSG00000140688 C16orf58 o-+
ENSG00000169217 CD2BP2 o--a
ENSG00000102879 CORO1A o--a
ENSG00000149927 DOC2A --o
ENSG00000149926 FAM57B NonAssociatedWithProgression
ENSG00000099364 FBXL19 ---
ENSG00000089280 FUS o+-
ENSG00000102886 GDPD3 --o
ENSG00000174943 KCTD13 o--a
ENSG00000079616 KIF22 o--b
ENSG00000102882 MAPK3 o--b
ENSG00000103495 MAZ o--a
ENSG00000103510 MYST1 o--b
ENSG00000176953 NFATC2IP NonAssociatedWithProgression
ENSG00000156873 PHKG2 o--b
ENSG00000156858 PRR14 ---
ENSG00000103485 QPRT o--a
ENSG00000103549 RNF40 o--a
ENSG00000188322 SBK1 o++b
ENSG00000179918 SEPHS2 o--b
ENSG00000099381 SETD1A o--b
ENSG00000178188 SH2B1 ---
ENSG00000106723 SPIN1 NonAssociatedWithProgression
ENSG00000197471 SPN o--a
ENSG00000080603 SRCAP o--b
ENSG00000103496 STX4 o-o
ENSG00000213599 SULT1A3 o--b
ENSG00000213648 SULT1A4 o-o
ENSG00000149930 TAOK2 NonAssociatedWithProgression
ENSG00000169221 TBC1D10B o--b
ENSG00000090905 TNRC6A +-o
ENSG00000178952 TUFM o--a
ENSG00000167397 VKORC1 o-o
ENSG00000090238 YPEL3 ---
ENSG00000180035 ZNF48 o-o
ENSG00000102870 ZNF629 NonAssociatedWithProgression
ENSG00000167394 ZNF668 o--b
ENSG00000229809 ZNF688 o-+
ENSG00000156853 ZNF689 o--a
ENSG00000169955 ZNF747 o--a
ENSG00000169951 ZNF764 NonAssociatedWithProgression
ENSG00000169957 ZNF768 ---