PEACHi
GeneSet chr14q11 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
+o+ -2.3 0.02913 39.0 5.0 1.59
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000100439 ABHD4 ---
ENSG00000100813 ACIN1 ---
ENSG00000214274 ANG o++b
ENSG00000213983 AP1G2 ---
ENSG00000100823 APEX1 NonAssociatedWithProgression
ENSG00000100852 ARHGAP5 o++b
ENSG00000100802 C14orf93 -oo
ENSG00000100814 CCNB1IP1 o+-
ENSG00000100888 CHD8 +-o
ENSG00000129562 DAD1 -oo
ENSG00000157379 DHRS1 NonAssociatedWithProgression
ENSG00000100867 DHRS2 NonAssociatedWithProgression
ENSG00000157326 DHRS4 o--b
ENSG00000187630 DHRS4L2 ---
ENSG00000100938 GMPR2 -+o
ENSG00000196497 IPO4 o--b
ENSG00000129474 JUB +o+
ENSG00000213903 LTB4R ---
ENSG00000012983 MAP4K5 +o+
ENSG00000165792 METT11D1 o-o
ENSG00000165819 METTL3 -+o
ENSG00000172590 MRPL52 oo+
ENSG00000129460 NGDN NonAssociatedWithProgression
ENSG00000129535 NRL o-o
ENSG00000155463 OXA1L +o+
ENSG00000100836 PABPN1 o--a
ENSG00000129484 PARP2 o--a
ENSG00000100564 PIGH NonAssociatedWithProgression
ENSG00000100462 PRMT5 o--a
ENSG00000100804 PSMB5 o--b
ENSG00000100911 PSME2 NonAssociatedWithProgression
ENSG00000129472 RAB2B NonAssociatedWithProgression
ENSG00000100949 RABGGTA ---
ENSG00000100461 RBM23 o-o
ENSG00000169413 RNASE6 NonAssociatedWithProgression
ENSG00000092098 RNF31 o-o
ENSG00000252678 RPPH1 ---
ENSG00000165821 SALL2 o--b
ENSG00000092096 SLC22A17 ---
ENSG00000155465 SLC7A7 +o+
ENSG00000092201 SUPT16H o--a
ENSG00000129566 TEP1 +o+
ENSG00000092330 TINF2 o--b
ENSG00000100926 TM9SF1 o-+
ENSG00000211889 TRAC o--b
ENSG00000136319 TTC5 o--a
ENSG00000165804 ZNF219 ---